Protein Info for mRNA_6909 in Rhodosporidium toruloides IFO0880

Name: 15277
Annotation: K14315 NDC1, TMEM48 nucleoporin NDC1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 684 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 56 to 74 (19 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 133 to 156 (24 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details amino acids 233 to 252 (20 residues), see Phobius details amino acids 257 to 261 (5 residues), see Phobius details amino acids 282 to 304 (23 residues), see Phobius details PF09531: Ndc1_Nup" amino acids 49 to 676 (628 residues), 393 bits, see alignment E=1.5e-121

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (684 amino acids)

>mRNA_6909 K14315 NDC1, TMEM48 nucleoporin NDC1 (Rhodosporidium toruloides IFO0880)
MSVFAPSALSSASSSQAPPTSSLSSFLASTSVPSAPPPSQSYVQLCKVVLQRRLRNLFGL
TAVAAGVALYLTIFDPRELPGSLFNVVPLLLFAPVAFLGTLPVLVLRKQTITTSRPPLPT
LFSKLSSIRKRSLTLPVFLAYLLAASNLHFAYIWAASWTSRDARLGWLFFHQGRDAWQVN
ERRLLLAIFHVVLAAWATVQHIVEDRAQVDFDDDATLTIPARLASKGRKRCSSAFQSASS
ATFAFWSAYVLFRRPVLRFFLAHVLPTWSRPYMYAMMRQSGAYSLTLATRAFASALLFFL
AWEAAYVCFEVYATHPMLVSQFAPNPNQALLSGLRASDPYYQHFAFLELSLLTLTNPSRR
QAIFKDVKPGSAAGGAWAEISRECLLMIGKELQRAKGRSSSGASMSSSPAARDEQSSPNR
APVKSGDVFVPSKPSLFDKLASAAINSSSQALGSSPAVQGASRAITSTSQVPAAQEAKQA
VSTALTTASTAVSRVPSILQSAHLISASAVQSVTNAVKTAPPPDMVAEVVGVEQKVAKLV
PAVARGKVFEVSMEYRVRNRVPRRQETVCAIQALSNLICASLTEDPYGVAQRDIPKVLEA
FVRYLAILDSVAAELQSAAEQVVGGTEEQERARRVVEREIGEVQDALRNGAKAILTEFAE
YLGSFRFPTKVASQLQLLVDYGGN