Protein Info for mRNA_6914 in Rhodosporidium toruloides IFO0880

Name: 15282
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 transmembrane" amino acids 40 to 66 (27 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 270 to 289 (20 residues), see Phobius details amino acids 310 to 331 (22 residues), see Phobius details amino acids 343 to 364 (22 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details amino acids 401 to 424 (24 residues), see Phobius details amino acids 433 to 459 (27 residues), see Phobius details amino acids 532 to 551 (20 residues), see Phobius details PF06609: TRI12" amino acids 35 to 564 (530 residues), 77.4 bits, see alignment E=8.7e-26 PF07690: MFS_1" amino acids 46 to 452 (407 residues), 59.1 bits, see alignment E=3.7e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (583 amino acids)

>mRNA_6914 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MLPDYKRNDSMDEEKGTEMRIEDAKVTVEPVHTVSRRAIGCVVGACFAIFAAVFGVTSTG
VYAAAIGAGAGNVSETPWFSNTAQICQVILGPLVSLSADLWGRKPFMVAGLAIGAVGAIV
TSTSHMHQVALVGVVLTGIGFSPQGLYVAICSEVMPRSQRPKMQAIFNIASSLGGTMGIA
AGGLYVKYNVVGAGWRMIYGTLAIAYGLACITIFLSYRPLQKRPDVSAVFHQRNPALVLD
LIGVALLICGVPPLYYGLISALNPYKWSDAHVLAPLLTGVAGLVAFGLWEWKGNKEGLLH
HALFSKSRNYGLSIALLFLEGILFFSFNAFWAREATLILGLPAWLAGINFLWFFIPSTLA
TPVFGWASQRFKEVKISLIVGFGLFLVASIGMATVNPDSRIAFRVYAAIAGIAFASPLTL
MSVCAQLAAPPQLLALASINLLVSRALGGVVAVACYNAVSKTKIAALVGPRLAAAVTPLG
FPSSELAGLVHAAQLSGAEGVAALKELKGATPAVIKAVQLAMRQVYADSYRWVWVIAAPV
ALIAIVLVLLLEPIAPMMTARVDAPADVKNDAQTSLDREIEAI