Protein Info for mRNA_6919 in Rhodosporidium toruloides IFO0880

Name: 15287
Annotation: K07556 ATPeAF2, ATPAF2, ATP12 ATP synthase mitochondrial F1 complex assembly factor 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF07542: ATP12" amino acids 45 to 168 (124 residues), 142.7 bits, see alignment E=3.6e-46

Best Hits

KEGG orthology group: K07556, ATP synthase mitochondrial F1 complex assembly factor 2 (inferred from 54% identity to scm:SCHCODRAFT_65870)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (282 amino acids)

>mRNA_6919 K07556 ATPeAF2, ATPAF2, ATP12 ATP synthase mitochondrial F1 complex assembly factor 2 (Rhodosporidium toruloides IFO0880)
MLRSAVSKRLLQAAAPCARCASSSAPLNAAAAADSQTNRAEKQMKRFWKTVGVEGRPEGN
FAVLLDKRTLKTPGGVPLLVPKERLPVALCIADEWENQKSVLKPHTLPMTSIAARAIDGL
NNESTRKDVVAYLLRYLDTDTVCFHEEFPQRLVKLQEAHWKPLIDWVEKTYDVKVNLYEG
ILNTKQPDATILKLGSVVSDYDAYKLAAFERAVLASKSYLIALGLVEGFLSADEAAKAAH
VEVQSQIDRWGEVEDTHDVDHQDVRVRLGSAALLVAAQPHLA