Protein Info for mRNA_6925 in Rhodosporidium toruloides IFO0880

Name: 15293
Annotation: K02331 POL5, MYBBP1A DNA polymerase phi

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1271 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF04931: DNA_pol_phi" amino acids 57 to 889 (833 residues), 468.5 bits, see alignment E=2e-144

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1271 amino acids)

>mRNA_6925 K02331 POL5, MYBBP1A DNA polymerase phi (Rhodosporidium toruloides IFO0880)
MKGSQPRAHAATASSTLPLFPLLASHNPQTRTDAATQLITALPLSLSDPKQDPDTPYTLK
RLVTGLASSNEAARQGFAVALAQLVQSLPEDNDAATVFPALIEATTSKAGMDAREERDLL
FARLMGLHALVRSGVLVRPEGKASNAGENWKEVVLALVSLANKKTWIREPAYWVVCDALR
ALLEVDDAVAWKAETVQWAVQRLLGDAREKARGWSPEKVAIVLVLQSHGVDADYATLLAP
TFPSGSLLARSSLSTLANALKGSLSSSISSDSPAGPSQGSNAVKTAKSTSAPAPGQAPHF
VWQLLCDAYFPSSPFPSSRTEIADRAPFNAFWTACIDTPLFGSSSHPLKALGFNLIQLFL
PRLSNPAAEIQTLFGPNALRVLHNHLKRDSAPASAAGGGKTLAKVAEKLVGSTLPSYLSQ
HPEAALPVLKALVSEPNSQYNAFETKVLEKIVVKLPLSAGGVRGWVAYLRSVVLSPSLLG
SEEGAEAKEDEEKVVAAQRNWAFDQMLFVVRNASVEKDDELVKGLLEFLAVVGWFEVRKE
GGKGARSYTPTRPLTPTHRLSARSRFFSILSALVSAPAQLGGPAWLARALGVLDTLEGDS
KHFARAEAEDEEEEKEGWERLKALHASLSQSPKNGEEKELLRRATARALLEGVRLVVWDE
GADEAGDVIEGAVDAVEALFPSLATSSSSSSDDEYTEEGDKPEPATILLDTLLTLLRRPS
AFVKSFVGPIVLRGFADEVGEQGVELVLGVVAPEEEEEEEGEDEEMDEGEKEAGDEEDEE
QSSEDEDDEDDEDDGLEVDEAFKQELLAALEAGGMAVPNAASDDEDEEMQDGEGESEEEE
LLDDDAMLELDERLADIFRANGGGRRSKKRDRQDDLHYRLRCLDLLDVLAHAKPASPLLT
PLFVPLFNLIRTASSAVESELQTKAGKLLRFLVQPRRAASPADSVNASASAQTALDALKA
LHKAAANVDDVSLAPLCAQVGVALVKTVAALTPSTAQADVSRIYLASFEKYLTTKNAKTR
VQPALTLEAAKRAPAALWGMVGRVVELAAGEGEKVNAFRRMQAFEVAQALVTAYANLKTA
ESKAGVLAALPPYRDALYTALSSSLSASTASPDFDIARLKLLAKQALAIARLTVQISSQS
TAAQLWKADEWAKLIDVAKKNERFKGAVGVQTLVKQLVGVLGASVAENAAAGKAGKKEKK
RKAGAADKANEGTPAKKAKQDKAAVPAPLAAAPENEVQDESVEAAEGAEADTATPSKKDK
KKKRRQSAGKA