Protein Info for mRNA_6942 in Rhodosporidium toruloides IFO0880

Name: 15310
Annotation: K15029 EIF3L translation initiation factor 3 subunit L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 633 transmembrane" amino acids 258 to 281 (24 residues), see Phobius details amino acids 293 to 315 (23 residues), see Phobius details amino acids 321 to 337 (17 residues), see Phobius details PF10255: Paf67" amino acids 141 to 545 (405 residues), 477.6 bits, see alignment E=1.8e-147

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (633 amino acids)

>mRNA_6942 K15029 EIF3L translation initiation factor 3 subunit L (Rhodosporidium toruloides IFO0880)
MQPYEIAVDEGDFEDFGIHAQQEPLYSDAGNEQIAQQQRIAEAAAAQASALEALGAVPEP
VKRYLISLWTLLNAPQPNLAEIQSAYEAGWNRLTDKFYAKTEWPDAEIIAPLVNHDEVFL
ALYREKSFRHIFANLNPNLDDRIQSYDQYCQLFNLILNAPGPLPVTLPIDWLYNIIDEFV
YQYTAFALWRSKTQGKTDEEKAILAESGQVWSCYSVLNVLYSLIQKSKIQDQLAAAQKGE
DVEAAAGEYGSIPLYHNLGYFAILGLVRVHVLLGDYTLALSMLDHIDLNKKALFTRVTSA
HVAVYYYVGFAYLMLGRYPDAIRAFSHILFFVLRLKHFQRGSQFDQINKTADRMYALLAI
CQALCPTKVDEGISTAMKDKFGEQYGKMVRGGADALPAFQELFTHGAPRFISPNPPPYEA
ESDEVLSQFASLPDPSAHQLSIFLSAVEPQLTTSTLRSFLRLYTTLGTDKLAKFLELEDE
ESVLEMLMTAKGAARKTTWVKGSLLEGEETGVSDLNFGIDEGHLTVAQSTTSRRYGDFFS
RHALKFSDVYEQLRHKPLPVPKPRAAQQSGAKDEGKKVGFAGVEGQRREIRADVGRLASP
RSGFVCLSVDEVREEDEVAFPLSFLSESSPSSP