Protein Info for mRNA_6952 in Rhodosporidium toruloides IFO0880

Name: 15320
Annotation: K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1279 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00443: UCH" amino acids 173 to 507 (335 residues), 131.1 bits, see alignment E=8.2e-42 PF13423: UCH_1" amino acids 173 to 456 (284 residues), 66.9 bits, see alignment E=3.8e-22 PF00240: ubiquitin" amino acids 1101 to 1157 (57 residues), 30.4 bits, see alignment (E = 4.1e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1279 amino acids)

>mRNA_6952 K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48 (Rhodosporidium toruloides IFO0880)
MPPKKKAGAVTTIHADLLAAFDETKSTASLRPDRLSSDLLARAYGLAGPRDGQNPVKQLH
KACPPRWTEEAEQERAKKEEVKESPEVIVLDGTDDEGKKTRAGDRKGKGKAKAGAVEIKE
KPCSAENCGNNPRCLNWLGQDKWENSDKALKDFRKAAGLPADPSNDRDPEIPVGLKNLGA
TCYANSFLQVWFRDTKFREGVYSVLPPATGNVESSPVFQLQVLFTFLQTSKQAVYDPEPL
VESLKIKKTEQQDAQEFSKLFLNLLDMQFQKQAKRVQAEGGSTKIGQLVDEQFGGRITYG
TQCLSCKNKSAHPSTFFELEVNLTKNCKLEDRIAASLASEKLEGDNQYFCENCGKKRDAL
RYTELAELPPVLHVSLLRFVWDMETGERSKSQHAMTYPLQIDMGQYLPRDAQGNKREVWY
DLKGVLMHKGVSAHHGHYVAQVYDESQSKWFLFDDEAVSPIDDLNSPTTYDEDEAPVSSK
KRPSKGFTRDKRGNILPKSKDAYMLVYTRRRDASDPPATAEPAPPPLAQFTVEKLDKAYH
EEVEKWLDRSKEVEQSFEKMRDVKRSIYRIWDVIEDDEEAFLVDKHELRRWVEEGIKKPG
KGKGKAADPDEKDEDVIVVEEEEQKDASSVTLPKDEEEQGKQKLEDADMPDVDQSAVQSS
TSAPQSPPPTPPAASTNGKAVESDESKTEKGDDLPHPSEVAAIASPAEPIKLLSNDAIVC
EHGLAKPQKADQMKRVSQYAIMALRDIGVTVNPELRTPSSFCRECVGAIAADVVYAKQHL
KDVDEMRKSENADLEQNKTAWISREWYRDFMKNKPRMHVAGTTVHPSPYDKPFIDDVLCE
HGGRQPDTSKRKDIGKETIKLLRKLFEGFVPIVNPKSCDICEGQHEQVEQDDHEARARAS
LVKKHIKSFSDQIRLTGTRLAISSDDTAHFVVPRTYMIKLVKWQKSKTPTAAGQPGNLDN
SHFVCKHGDLCLDLNAEVENPRKIDIATEQEWRFLAKYYNAKPAITIWQEAGLQHPSSNP
PVCEECLSEEKRNFEVGELKVRSLSASDFDENNDRKIEPEGSPEAERPAPIGSIRQYGQR
VSTRIKNKSNNPNWSKPLKVINMEKDDQVKDLKRRIEIELKYPFVTQRLFFKAQELGDAS
ATVEELGILNGDTIEVYAVGMDGDYDPSAFEDKPSKRKGKRAREEGFTGTGLFGFEEEDG
GDDGSRSGADGSSEAAEGGEVVSDGRGKRSKKATSPAPAATNGDLEDIDMDDTIPCPSCT
FLNNAALSSCEMCDSDLKG