Protein Info for mRNA_6957 in Rhodosporidium toruloides IFO0880

Name: 15325
Annotation: K13100 CWC22 pre-mRNA-splicing factor CWC22

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 864 PF02854: MIF4G" amino acids 143 to 325 (183 residues), 49.7 bits, see alignment E=3.9e-17 PF02847: MA3" amino acids 433 to 538 (106 residues), 98.2 bits, see alignment E=3e-32

Best Hits

Swiss-Prot: 54% identical to CWC22_EMENI: Pre-mRNA-splicing factor cwc22 (cwc22) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)

KEGG orthology group: K13100, pre-mRNA-splicing factor CWC22 (inferred from 58% identity to scm:SCHCODRAFT_74942)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (864 amino acids)

>mRNA_6957 K13100 CWC22 pre-mRNA-splicing factor CWC22 (Rhodosporidium toruloides IFO0880)
MSRDPSPRRERSASPADSPRVSRKRSPESRSPSPPARRVRPSSPGPAGRDGAPSLPRLQD
VDPVRLRERERQMRAMQEVEGSRAPISIKPKVDPAAEVKKMALTRGGGTYIPPHRLRAMM
AEQAQDDQEGEDYQRLTWEALRKSINGLINKVNTANIKLIVPQLFGENLIRGKGLFVRSV
TRAQASSLPFTPIFASLVAIINTKLPQVGELLLHRLIHQFRRSYKRNDKPTMTATTTFLA
HLVNQQVAHEVLALQMLVLLLERPTDDSVEIAVSFMREVGAFLAEHSARANNGIFDRFRT
ILNESGIDKRVQYMVEVLFQVRKDKYKDNPIIPEGLDLVEEEDMITHRISLDDEVTVQET
LNIFKFDPNFKENEEAYAEIKREILGDSDDEEGSGDEGDTEEGSDEESEVDDGIKADGTV
DVHDQTGANIVNLRRTIYLTIMSALDFEEATHKLLKLDIAPGQEVELCNMVIECCSQERT
FSKFYGLMGERFCKINQVWATAYEQCFVNYYATIHRYETNRLRNIARFFGHLLMTDAMSW
TVLEAVKMNEDDTTSSSRIFVKILFQEMLEGMGLKRLVDRFKDESLQPYLGNVFPIDNPK
NTRFSINFFTAIGLGAITENMREHLKKMPALLLEQQRRAQVTGGGASSSSDSDSSSSLSS
SSLSESSDYSDDSRYPRRKSSRRSPSPRRGRSRSYDSRDRSRSRSRARSYDSRSRSRSRT
PSRSPPPRNNRRRSPSYSRSPPPRSTRRRSPSYSRSPPPRRRGDSPRRRRDQSPTPPPRD
SAAPKRDFRHPDRRFDDDDRRDGPSASGGGGGGGGRDFRHPDRRFDGPPAPPRGGGVGYG
PRAGGGGGGGGGGRERDGGWGSRR