Protein Info for mRNA_6959 in Rhodosporidium toruloides IFO0880

Name: 15327
Annotation: K14805 DDX24, MAK5 ATP-dependent RNA helicase DDX24/MAK5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 871 PF00270: DEAD" amino acids 279 to 508 (230 residues), 106.4 bits, see alignment E=1.5e-34 PF00271: Helicase_C" amino acids 574 to 681 (108 residues), 90.9 bits, see alignment E=7.1e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (871 amino acids)

>mRNA_6959 K14805 DDX24, MAK5 ATP-dependent RNA helicase DDX24/MAK5 (Rhodosporidium toruloides IFO0880)
MPLNAHAVARLRSKKRSSSRTASSTTASPAPSTSSKKAARFRDAAPKDLRWKSIVLPAEL
GFDDDGGLLELDEVEGVDVVYEDGRVAFKVREDEDGEPPAKKSKKGKGKAVERDDDDEPE
FVPVDQAQESEGDDPKFAEDEPLSFPDEELEFPEEEAGEAVEVAEGEGADVVEEKKKAKK
QKKEKGKKRSRDEAQENGSNGGAVEEAADEPPFDVEAELPAWSHIPLANPLYRALAELKF
TKPTEIQEKALLVGEDAKAQAEGEEEQEKSAFDTAPAGREHDVVGIAQTGSGKTLAYGLP
ILSHILSQPSPSSSPSDSDSDADEPSLPSTRLAALILCPTRELALQVRTSLSSLSVRSLP
LRTPSPETEKVAPEDPRKRKQGRLVQVVALTGGMSVEKQKRQLERGADIVVATPGRLWDL
IGESDMLVQEIKNIKFLVIDEADRMIENGHFAELESIVRLTRREQATPDDGFVDDFDSAV
ASRTNVTTLPCRPDMRTFVFSATMSKELQLNLKRKGGPKKFVPKAVEGEMTSLDDLLELL
DFRDPDPEIIDLSPEHGLVETLKECKVECLANEKDMYLYHFLLRYPGRTIVFLAAIDGIR
RLHPVLTLLKVNVIPLHSGMQQRQRLKALDKFKSSPDAVLLATDVAARGLDIPSVSHVVH
YQLPRAADTYVHRSGRTARAGTEGLALQLVAPEEKKVQRMLMASLGKDIDLPTLPTDFSI
LDQLKKRIDLAKEIDQAQHRATKQAHEDKWLREAAEAMEIDLDDDQDSDGDGPQRSSKKQ
RGQAIAHARQLKAELDNLLKKPLMVRGVSAKYLTTRSKIGLVDQLVGGTGHSKIFGLSTS
SALEDLAAAPRTKKQKRAEKTREKKAEEAEE