Protein Info for mRNA_6967 in Rhodosporidium toruloides IFO0880

Name: 15335
Annotation: K19995 SCAMP secretory carrier-associated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 127 to 148 (22 residues), see Phobius details amino acids 159 to 177 (19 residues), see Phobius details amino acids 189 to 212 (24 residues), see Phobius details amino acids 230 to 254 (25 residues), see Phobius details PF04144: SCAMP" amino acids 94 to 263 (170 residues), 165.4 bits, see alignment E=8.6e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>mRNA_6967 K19995 SCAMP secretory carrier-associated membrane protein (Rhodosporidium toruloides IFO0880)
MADPFRDPQPQTLDSNPFADPAVQAGLHSHAHEEYDASLKTGGSTYSLPQMGGGGGGGED
MQARLADLQRREQELANRESALKAKQEHIRKHGRNNWPPGPFPLLFHSIEDEIPEQHQAT
VLTLYRIWMFLILVLIVNLVGAILLLISGASNGGADLGSGIMYVPVIGALSFLLWYRPVY
NAYAKVYSFFYYIFFLFGAFHIAFCAYMFVGIPSSGSAGLINLISRFAGGHIVSGVFCVL
ATVGWALEGLAMLWMYKNVWAHSHGEQGHSLAQAKQEIQMYGIKQYLFKAHSMPASSQQQ
AQV