Protein Info for mRNA_6972 in Rhodosporidium toruloides IFO0880

Name: 15340
Annotation: K20279 SYNJ synaptojanin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1153 PF02383: Syja_N" amino acids 68 to 436 (369 residues), 223 bits, see alignment E=3.1e-70

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1153 amino acids)

>mRNA_6972 K20279 SYNJ synaptojanin (Rhodosporidium toruloides IFO0880)
MHMVPLSLYLIRQPRTLVLVSSDYCLLFKPAPASKASDAGSVSIVMELLERDEVDLESAV
LLHSRVSGCLGVLAVGNETFLSIITHAIPLGSTYSRPFDGPGTEPINRILAVDFFCLTSP
SFDYLHAPITSSDSYSTSPGNDSFEDAASLASSSSSSLRTEPTPTEHPCQGIRKILSNSS
FYFSSGPEAFDLSTRLQARLEKAPQGKAAPEAADRGGGGVDDEPNPDGYEAAEIDHDARF
LWNTYLVAPILSFRSSLPLNLREEFDRQGFMVLAIQGYAGTYDITLGGEPAVLSLISRLG
WKRSGTRFNVRGVDDDGSVANFVETETILRTRDLCFSYVQTRGSVPLFWEEGGGQPFNPK
ITITRPLEASLPAFLRHCEDLLEHYSRFHIINLLSTKEGEAALTSAYEAHLKVAKEMDQN
VAEGVGITEFDFHARSKVGGIESVKSQLSREIGDVEEDFGACVVGVDQEGRTTPILTQKG
VFRTNCKDCLDRTNAVEDSLSRFAIEDFLRNTHAGWLGPDSAQLWASHRVLWADNGDALS
KIYVGTGAINSSFTRSGKRNLAGLLSDASKSVNRVFQQQLFDSGKQKAIDALLGNLATSR
KVRIFNPIRDTLRARLRERASEFTTSEPTTIWVGTYNLNGKSPGEESLMDWSFPVDGPEP
SLLVLGFQEIVPLSPQQIMSTDPEKKRRWEQHILQTLASRPDKKSDYVILRSGQLVGTAL
IVLCKTEIAGEMRNVEAAIKKTGVRGLAGNKGAVAIRLDYRASSFCFVTAHLAAGHNNVD
ERNQDYMTISRGLHFARGKTIDSHDNVCWCLDSNYRISLSNDEVRTLAEQDDYVALYAAD
QLNIAMRTRGIFQGYQEAPLLFRPTYKYDNGTDDYDTSEKMRIPAYTDRILYKGPDLDCS
RYSRAELRMSDHRPVYAIFRARIRTVDQAKRAALRKELLQDLVANPPEDALENQLSQIGL
NGTKTPRRLPPPSDDQQAWWNGKDGSFEPPAVLPKPRNLAVSNPFDPGFYKSSPTTSVSG
GQATPASSQRRAPPAVPRKAIPTGDLLDLDDIASSPTEQSAPSPSSTPTSFQAVKRKPPP
PAPRATSPSVTRSSDPLAPDLSSSASRSSSISNGSKKPPPPVPGRPKERDLSGSSTLSEV
DSHATGESWTLLS