Protein Info for mRNA_6986 in Rhodosporidium toruloides IFO0880

Name: 15354
Annotation: K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 PF16131: Torus" amino acids 155 to 193 (39 residues), 32.1 bits, see alignment 1.6e-11 PF00642: zf-CCCH" amino acids 161 to 180 (20 residues), 20.9 bits, see alignment (E = 2.8e-08)

Best Hits

KEGG orthology group: K12872, pre-mRNA-splicing factor RBM22/SLT11 (inferred from 61% identity to cci:CC1G_01164)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (333 amino acids)

>mRNA_6986 K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11 (Rhodosporidium toruloides IFO0880)
MPPKADLNKAGHESSDFPSLCNVCLGPNPYIRMSKQPLGAECKVCTRPFTVFRWLPGQGM
RYKKTEICQVCAKAKNVCQTCLLDLQFGLPTQVRDTVLGVQSKAPTSDINREYYAQNLEK
AQEEGGASGAFQFGKADSAGRDLLKRLARNDPTYKRNRPHLCSFYAKGACNRGDACPYRH
ELPVENALSHQNIKDRYHGNNDPVARKILAKHAGEAGLAPPADTDITSLFLTSLPATATE
DAIRHWFTATAGLPDNKLKSIVLVSASKSAFVNFRDRDAAELAAEKCSVGVKVDGHPVKV
QWGRSRPKKTGGGGPSRAPAGEVSQREIEATGK