Protein Info for mRNA_6994 in Rhodosporidium toruloides IFO0880

Name: 15362
Annotation: K10134 EI24 etoposide-induced 2.4 mRNA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 transmembrane" amino acids 63 to 85 (23 residues), see Phobius details amino acids 97 to 122 (26 residues), see Phobius details amino acids 159 to 192 (34 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 312 to 332 (21 residues), see Phobius details PF07264: EI24" amino acids 62 to 239 (178 residues), 66.3 bits, see alignment E=2.1e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (497 amino acids)

>mRNA_6994 K10134 EI24 etoposide-induced 2.4 mRNA (Rhodosporidium toruloides IFO0880)
MSYYQRGHSKQDSFAGGGGVVPPLSATNTLVLQAGFAIQGMGDAMKLQVAGEKLTGDRIV
QANVLKSSVIQGIVLFSALVIKRILRRAVGLRAGEGITSSVILFGFHLFWLYPLAAAATY
YSGLLRPAQETDKRSVRGGGGMDNKGLTVKISYRTLVTLNYFLFFYALRMVPLLGAPLSF
AYASIVDAYYCFEGHWVKQGWSFGDRVRQVEQRWAYAFGFGFPITILSWWSSDPIVNLAV
FALLYPLFSLTSTVAIPQPLDPSFPGSASSKAPSFLHSASGLGYGSISIAAAEGGEESRG
RKGSAYVPNRIRVLLVAEMVYGALTAAFGAGGGAGGGRKKDAGMGHGMGRGMPSRGGASA
YGAATSTFDSSAYGAKASSSHDTFASNNPYAATTLSRYSAESNPYGPPAGSASASTYAPS
PASAYGTPGVSATPPRRGYAAVDPNSNVAELSPGGSMYQQQMSPTRGGQAGMGGYGGDRT
LDSYIRQAGLRGKNKGD