Protein Info for mRNA_7006 in Rhodosporidium toruloides IFO0880

Name: 15374
Annotation: K17974 JSN1, PUF1 protein JSN1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1367 transmembrane" amino acids 1017 to 1038 (22 residues), see Phobius details PF00076: RRM_1" amino acids 505 to 557 (53 residues), 41.8 bits, see alignment (E = 7.6e-15) amino acids 618 to 680 (63 residues), 48.1 bits, see alignment 8.1e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1367 amino acids)

>mRNA_7006 K17974 JSN1, PUF1 protein JSN1 (Rhodosporidium toruloides IFO0880)
MAGVGENGSAASSPTLSLKGRTNELKAEDSLLGPPRSSVLAPPSSTTPQVSLLGPDSSPS
TSLFPPIDANGISAASATSALAGRPRAGTLPSTFHLRSSAAPSSSGLRSALAAPDALIAP
SAFLNGTASLPGSGPTTPLEQPFASTLLPPSSSAASQHRLRSGSLTLPPSSLSSAFGPGV
FSSADWTTRTDRSGSDPTRLSTLASDPRSPDESSYGDDSHVRTLDYLGLAEETSSSGGGT
NESLLTSAPLHASGVNGRSNSLSGSLAPPMQRLGSTGSIQPAPSALGDFAAHQRLRSHTV
ASAFPPRFNADALSLFHSPHPSASYPSSVAGHSPAATRDDPFNSSPPQPYHLPSHPLHRP
SSSSDHTRLLYATDASLSDATTPPAQAEASVPAPAPPLVSLLPPQPPSSAAVDHPNRGRS
ATIGIIDDSKGEMIPRRRAGTTAGIPPRHLGIGATSPGEGPVAAMASRMGRLSISEDPSQ
GGSGWGTSEGAVSLSPPVQQPTRSLWVGNLDPKTTPAELQDVFAPYGAIESLRLIPEKEC
GFVNFVSVADAMRAKEDVLNRLGGQLTKTSGLVRIGYGKAESTPAPTAPGLVHPRSTAGP
APVSAAEMNLQTQPTRALWIGSIPPTTTPNHLLAVFSSFGPIESARVLTHKSCGFVNFER
LDDAVAARKSLNNREILGAEVGPVRIGFAKVPTKVSNAPFANQVNGDGTPATAAANGISS
YPHVYNALSQISGVSNIPVERQLADGQMQDYRSNMVLGLVGNSHYATAHSFQQPSPPHGQ
PVETHKGSINEMQLLMRELSQGDPDLEAHVAAVGEERPPIMYYTSIPLAVLNDPRFARRY
SNNDAPRLREIRKRLESELPTDEVDEIAHDLMDEIVPLASDYLGNTLVQKLFEQTSTPVR
KAMLERIAPHLAPIGTHKNGTWAVQKVIQCAQDEDEYALIQQSLTPYTPPLLLNDFGNYV
VQGALRFGSPYADFVFDAMVDRIWEIGSGRFGARSTRQTLENPESPRLHVKRVAASIVLN
AIPLATSSNGALLITWFLESSNLPNRYSLLAPRFAPHLSHLCTHKLASQSIMRVINQHED
DEAQRIMVDALLDPDAKVLEDILGDQMHGTACIQKVTSSTHLTVERRQYLFDRIKEAIAS
LKVETVPAYRKLIEEVGGTYLGPPAGNTPPYTPGPLPHHGGRGPARSPTHGFGGPPHSHA
PSRRVPSGHQQFVPSQIPYPQAPSYGAASPYPSAYSGAAPYPLYPPPPFYGGPAPSSQFG
SPFSPPFGHTSPPSSHAPSASSPAVSPMMAHPGLPFSRGLPPGSAYPSISSPDPFQALRV
ASSDFNPAFSPLASPPPPFYPMGSFGTFAAQQEAPGGPFDANKPANG