Protein Info for mRNA_7012 in Rhodosporidium toruloides IFO0880

Name: 15380
Annotation: KOG4364 Chromatin assembly factor-I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 896 PF12253: CAF1A" amino acids 559 to 632 (74 residues), 83.4 bits, see alignment E=5e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (896 amino acids)

>mRNA_7012 KOG4364 Chromatin assembly factor-I (Rhodosporidium toruloides IFO0880)
MDVEDATTPSKASGSKAEGEVLTLDDSSDAEMSEVKETKGKKGKGKEKDVGKGTKRKSEA
SSSSAPSAKKSKPSTSKSAKASSSTSKKADDDDKKLVVLKGNKFVVKQKPIDVQSMASFL
RERADFIDYACKLFRDDKSNTLSDYPEEHHSFIAKLIHESDKTLVSLAGKIKADLKTWIF
THLTATAEDSQDGNELDEAGVADRIPVAPLKTLISTLATRTNYGLSLSSLPSDYVLPKDG
EGAEPSEVPLPLQYWVWEVEDEEMWVQEMKGKWEKRKAERVEIKSTCLSLFLALPEAEQH
ALLLGTSSSKASSSTAKSKAKGKAKAEDADDEGEDKDKEGGEKEKKPIKEKKPKKEKVLT
EEEIKEREEKARVKAEKEAEKEAKRKEREEKRAAKAEKEDEKARIKAEKDAEEKKKADIA
KKQKSMFTSFFVKKSASPAPVEAGPSSSPAKSSSTSDFDRVFHPFTVRECVTVAPVNRFL
HDGKKVDVKINSMPELAKDAALAPLTTSHRYRTHTHNLYPSPPYIVRDTVQRINDASLTT
QDTSELYDLLNDRSKIKVKLLKFHEDLRPGYVGTWTKTSVMVGARNPLGRETFHLNYDVD
SEAEWEEEPDDPDAEDIGSDGGEDDVDGEAGENSDADSWLAEDDEIEYEEGYDADGDMVM
QAAENGGRLPGEEDDDVVVMSDPQAEKERKRKEREAKKRKAEKERRKKKGLDGPILPLVK
GPVWQKDVETVAEPVFKSMRIHFLNDASFGLNPFTFVSKPRVVPAAPALTAASSVSKGKE
NVAIGAAAAAAPTDKVGIVAPSSLANGTVNTLKAKRAGPKQPFPEDQVAAFLRHVHGSTK
TRPVLLDEFVSMMKEQNTPIKKNTVEAKLKELDIKKVKGANIVDAALLAQYGISSA