Protein Info for mRNA_7013 in Rhodosporidium toruloides IFO0880

Name: 15381
Annotation: K10755 RFC2_4 replication factor C subunit 2/4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 PF03215: Rad17" amino acids 30 to 89 (60 residues), 28.9 bits, see alignment E=2.2e-10 PF13177: DNA_pol3_delta2" amino acids 49 to 196 (148 residues), 49.4 bits, see alignment E=9.4e-17 PF00004: AAA" amino acids 68 to 194 (127 residues), 62.2 bits, see alignment E=1.5e-20 PF08542: Rep_fac_C" amino acids 295 to 367 (73 residues), 47.2 bits, see alignment E=4.8e-16

Best Hits

KEGG orthology group: K10755, replication factor C subunit 2/4 (inferred from 65% identity to uma:UM00216.1)

Predicted SEED Role

"Replication factor C small subunit" in subsystem DNA replication, archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>mRNA_7013 K10755 RFC2_4 replication factor C subunit 2/4 (Rhodosporidium toruloides IFO0880)
MGDDATSKPKTPVFKGSGLGAGPRHFVDPANQPWVEKYRPKNLGEVSAQDHTVQVLQKTL
GSSNLPHMLFYGPPGTGKTSTILALCKQLFGPQLYRSRVLELNASDERGISVVREKIKNF
AKTTVTTNHDPTYPAPPFKIIILDEADSMTQDAQSALRRIMENHSKITRFCLICNYVTRI
IEPIASRCSKFRFKPLDTGSTGMRLKEICLAEKVDCPEDALDALIRTSDGDLRRAITYLQ
SASRLASATKEPITAVTVQEIGGVVPDGVMRTLGRALGVRDEEEDGDVEMGEAKMGRFER
VRMAVEKVTREGYSAVQVLSQLHDLIILDPLVSPRAKAAVALDLGQADKALTDGADEELQ
LLNCCARIERAVRRG