Protein Info for mRNA_7016 in Rhodosporidium toruloides IFO0880

Name: 15384
Annotation: K01142 E3.1.11.2, xthA exodeoxyribonuclease III

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 782 TIGR00633: exodeoxyribonuclease III (xth)" amino acids 517 to 778 (262 residues), 221.5 bits, see alignment E=1.4e-69 TIGR00195: exodeoxyribonuclease III" amino acids 518 to 778 (261 residues), 197.4 bits, see alignment E=3.3e-62 PF03372: Exo_endo_phos" amino acids 521 to 759 (239 residues), 56.8 bits, see alignment E=1.3e-19

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease III (EC 3.1.11.2)" in subsystem DNA repair, bacterial (EC 3.1.11.2)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.2

Use Curated BLAST to search for 3.1.11.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (782 amino acids)

>mRNA_7016 K01142 E3.1.11.2, xthA exodeoxyribonuclease III (Rhodosporidium toruloides IFO0880)
MPRWIAFDGAPTVKLLLETDDAASLPASAWQTFTFRLAPPSSPRSSSKGVRGGQDAKGRG
TTRGGLGGRQEAAGEPAQVWDVTSSQFADADISRQGDEAEAVPSSETDEDTLLRMRKRPR
RRSTPSQESSEPVKEEARDDFEGESRMSVMLPPPTQRRRRSTLLPPTQTADNITTSTFPP
TAPRPDITAASTDFYGDDSYAATQSIGGISLGPPPQFSWHVHQLVPLDQLRGRLANQKKR
YSKFAVLVCVLSFDKRDTKVGSLTEVVLVDSTGQTATLVLWKDSGDEIARVIQRGDVIFV
ENLTIKEYNGKIQLSFSDRESQLGVCWRTHITDDADYDYRFPEAWRHDIPQANAVLREAE
WFRRTYARSPQDCPRGCARRATRPRRLFDSPTSLAATILRFTSLVRSRLLAPARTVSLPF
RCFTFPTAPLAMPPKRTSSKRAAADEVTATKEDKEVQAKAEEDSPLRELSGSEKEEAPKK
KRAKKPPVTPLDPSVPTNKEVPEDLSPFPRPPEGCVRISAWNVAGLRASEKKGFSRYVNA
EDADILVVTETKTPELSLPALNDRYEYRYWGDHVKKGHAGTAIFSKIKPLNVTRGFQASE
EVTAADSEGRMITLEFENSYVVGTYVPNAGNGLKTLPEKEKWNRAFETYLRELDAKKPVI
WCGDLNVVPTPTDIRNWKTNYNKSAGCTDAEINGFKAQLNPEEGSGHKRLVDVWREKHPD
LEGHYTYYSYKFQCREKGIGWRLDYQVVSERLLPKVKACEIRAEIWGASDHVPIVLDIEG
PL