Protein Info for mRNA_7031 in Rhodosporidium toruloides IFO0880

Name: 15399
Annotation: K03131 TAF6 transcription initiation factor TFIID subunit 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 PF02969: TAF" amino acids 11 to 74 (64 residues), 91.6 bits, see alignment E=2.9e-30 PF07571: TAF6_C" amino acids 284 to 359 (76 residues), 43.1 bits, see alignment E=4.3e-15

Best Hits

Predicted SEED Role

"Transcription initiation factor IID 60 kDa subunit" in subsystem RNA polymerase II initiation factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>mRNA_7031 K03131 TAF6 transcription initiation factor TFIID subunit 6 (Rhodosporidium toruloides IFO0880)
MARQTSTVSGVWKKDSVKDVAESVGIANLPDEVAGALAGDVEYRLWEIIEESMKFMRHAR
RTRLKVEDVDQALKVRNLEPLWGFASSSQMPFKKTVTATGTVYHVEDEEVDLSKVIKTEI
PSVPRDISFTAHWLAIEGVQPLIKENPTPQELARYAPKPASTALIPSASSAAGQPPSAVT
PLVKHVLSRELQLYFTRLVDALGAGTQGATESSSEVREAALGSVRHDPGLHQLVPYLIAW
GGEQIANNLHDLPALQRALDLFHAMLENPTLFVEPYLHQLTPPILTCLLTSALPPVPSDT
YPSPPTIRTLAASLLHLLLERHAYAYPSLLPRVTKTLLRGLAGENRGLGARWGAARGLSG
IVVGVGAEPATGGTGGGNKAVREWIGGGLKPLGEMIEREDETYEGERQDVVREIFVSLAS
ISAWRLCGVTALERRFT