Protein Info for mRNA_7045 in Rhodosporidium toruloides IFO0880

Name: 15413
Annotation: K20288 COG1 conserved oligomeric Golgi complex subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1020 PF08700: Vps51" amino acids 135 to 208 (74 residues), 43.4 bits, see alignment 1.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1020 amino acids)

>mRNA_7045 K20288 COG1 conserved oligomeric Golgi complex subunit 1 (Rhodosporidium toruloides IFO0880)
MASQPPETPRPRSSSSTTSFTSPPPSSRRRPPPSVLSPLSGLSNASPAVSLRSSTYQSSV
RSPESVSGNSLAPSRFRTFSAAASQAGSIATTASPGGPARLKRGHARKRPGQPPIPPPVR
TNNPDEVDLMALEEPDEVFRMFGVRDVRKIEQRASDAANAKVAELRTMVGERYRDLLAAA
DSIVRMRSAAEKLVDKLDTVQTAVSAADSAAADTPTKQRPTLQNKRQRSNSPTEERTLAS
SATLSFTIHLLLTIPSLVHSLVDSSDFLLAARLEDLGRLVYRELSQYSAPAAGGDDDEEP
PRLQESFPIIEKQWEILSALRPVVLRNALGDLKVWDAPPSRTAQTVAAIVMLQETTTTSA
LSTFLDARSHTLDELLRAPSISSNTLTPAVVTERLEKVLGLILRTVEAVSTIFGGEGSEG
VLAQLLRQVEQPGDAASPVPPIFTAFPNYSTVQRHLPDSILRYSPTLAASQTGSSDGKQA
VSGQLEAWLSSEVERVVSGISSWISTLCSPAPNSPSSPSAGAKPLSHIRLAVRRILTTAE
PSSSAVAKSLQSRLEGTIETLFADVYRSRLSALVSRVQPSLQTLLLALPDSEADRDTAKF
LFDTPLAFPSAGMYVSRSVSTKAAGADPFEAFLGKVGKRVEGRSPLLDTGLTELEDAARD
LRTDLEDWLGEKEDVKAAEDDHEMRARLRKEYLSAAEETLKGVADALDAVLAEVADDVGS
SLFVGNFAFLLSSSRTCTRDLLLSGDSPQDLPFLSTWSNRLSAVQSASLETWRSQAVARA
VGKIQESMNAVAAAAPGASLWAWDASRAASGGEALLPSSPSSALLSALRSLSSSIHRVGL
HRTQSDPSIAFSLLTAFAEQARDVAGHFAEVLEKGEVQDNRVKREVAAQVAWDLALVGRL
VSAHKGAAGTKAEFEDVKQRFFRLVSSQSDTLASRVDESALQYLQRTQSILAALLPYDRA
PSAQAGSTEAAGKAKTLGATARLLPLGQADSGAGSLGDFKSTSAGLVKPGPRLGLLPTRG