Protein Info for mRNA_7048 in Rhodosporidium toruloides IFO0880

Name: 15416
Annotation: KOG2476 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 transmembrane" amino acids 247 to 265 (19 residues), see Phobius details PF13696: zf-CCHC_2" amino acids 353 to 373 (21 residues), 38.9 bits, see alignment (E = 9e-14) PF04677: CwfJ_C_1" amino acids 394 to 521 (128 residues), 103.7 bits, see alignment E=9.7e-34 PF04676: CwfJ_C_2" amino acids 550 to 622 (73 residues), 40.3 bits, see alignment E=7.2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (625 amino acids)

>mRNA_7048 KOG2476 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MAPLKVLVTGPAHSLDAYFTKLATLQAKHAFDLVLALDLFSQLDTATRDSQLERLVRGEY
NVPVQVYAAHGKDPLPPQVKQRVDKGDEVCANLNFLPKAGLLTLASGLRIATLSGTSPSS
ESGSPITSAELSSLTASLTPPSSLLSSKPLTPSNPTTSFAPELDDLSKRARARYHFFDAP
GVFWEREALEWPVEEGVSAEKSYCRALGLGAMGNKAKERVSFGAGLRLAFSRLAPARRGR
AGGRSKMIALTISILSSQWFYAFSITPSVSPSPPSTSTPSPFHTSLRSGTLSLASSLSGS
AGPRGLKRPAGVTEEDVNEMGVPNWIFEGVGGGAGKNAGGEGRERKKGKGPPPDHYTCRI
CDQKGHWIQDCPEKETRDAERAANRTHKGPAKPISPDECWFCLSNPKVTKHLIASIGNEV
YLTLPKGQVTSTDSSPVPGGGHVLLIPIAHYPTLRSIPTDLAPPILEEIELYKQALKKCY
KSFGAEMVAFEVARSAGKGGHAHVQICPIPSSLASEAESTFLTQGAKFNYDFEEIAEPST
FHARAEQDGKGTEYFKVDLPDGKSLVHWLKPGTPFSLQFGRETLALLLHAPDRADWKRCA
KPDDEEKKDAQRFKNSAFKAFDPST