Protein Info for mRNA_7080 in Rhodosporidium toruloides IFO0880

Name: 15448
Annotation: K12481 RBSN, ZFYVE20 rabenosyn-5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 PF01363: FYVE" amino acids 292 to 429 (138 residues), 68.6 bits, see alignment E=4.1e-23 PF11464: Rbsn" amino acids 611 to 649 (39 residues), 48.9 bits, see alignment 4.4e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (657 amino acids)

>mRNA_7080 K12481 RBSN, ZFYVE20 rabenosyn-5 (Rhodosporidium toruloides IFO0880)
MSSPSYVPYTPKRHSTNNSITSIHQLSSSSTPPHHGPSPLGGPASSSRTSSGLVRPSAAN
ADSSSSLLKAPQPSRPALPAQFSGLSTVSVASSGSGEGSGGSSGASRGQSQMGRQAYDVR
QARSPPPAPSNRPTPPPSTFPFASVPPGQSPFPPGTPDRSRSPEKPSGSPAPYANSTTRQ
PQRGKMPYQAGFQPHGVRRDRSDEFFGQRKRCSEARKLDEGRLERRLEKLVALHFPSAGT
EIKELSPKDSTLTTITSLRDTLRNRTAKELWRSVAGNVDVDIERAAEQAIVKWQDDKDAI
RCPICTAAFGVRTRRHHCRLCGRVVCFLPPTPISQLPEPALLDSSPDKPPPPPKPVRRER
CSTFFTYEHQQLGDGSRGEKKPYGVVVEVPPVEQDLSLDAAIGAGAAVQQKKEEDRRKKV
RVCRDCLNTALRLQMKALPIRTPTWLKLYEVLVQLEQEINVTLPSFQELVVLLSNPSAAS
QSTHPPSANHAKTLRKRLLTDLASYDTVSKRIRDLPLPPDAVQGGSQDRLQRALANRGAA
YLSEKLGLLRSLGNVEELGGGGAKGKGKKKDGKGDGEYTVKSLASLLEKEGVERVNEKVG
PELEAMAKLNVLREQEALVRSYVDDANARRQFEDAAALQASLEELRAEIPAVSATLP