Protein Info for mRNA_7082 in Rhodosporidium toruloides IFO0880

Name: 15450
Annotation: K20406 NPRL3 nitrogen permease regulator 3-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF03666: NPR3" amino acids 78 to 582 (505 residues), 345.4 bits, see alignment E=2.8e-107

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (800 amino acids)

>mRNA_7082 K20406 NPRL3 nitrogen permease regulator 3-like protein (Rhodosporidium toruloides IFO0880)
MASLLALLLVAKSSAGAQLVYGYPSVPKAVPRTHKPLYLGRRKISLHPDYNESSSSSDES
SESDDDEYHGPDSKQYLGFPDPVLASLLTPSRELCDQPFELVVDHLAFVGHPVWLGDDEG
PRERLDGAANEAGEQEKRETETEDDEDERGRSRLSRKGSMAEGAAEDDDDARRADRDQTV
GPPASREASLPPHARALLIPERDDSPSPRRPDALAHTHSSASTLHPGTSLASSQHSHNSL
ATAGRLVSFNLLCVIDTPPDSHLSSHLEGYYKDVVVPVTANIKALEKKDTWLTKEAAKLR
RMREGALEKDTPWDEFLATLPARSSLAGAISQLYTSLRGNKLASVHFGPLPVQVLFRGEL
STDDEVDLRDHEEYLLPDKGDESNSPERRNRSVSPSGHAFPRTRQAPIFSTMRRRPPVQF
EPWQTLLLLEDARILQRDVLEGSLLWRFLDICRPKLSFADYETLLDLYSEDHMLEDVVDH
LVHWKKARVVDLVSLKGAYAVSAEFEVKRLPSLVASFSDIFPNLPPLPVLLSQLSPAEPF
ASIVPSAQRASYLNALVWLLQHEVVEKQRTYVRIVASEEIKRATSMHWGSGKSGVSGTEG
MSVSSSRPDDVGVLSTSASAASDHSFGTNRSDGHSSTGGGGGRSSKHSSVRPDFDDARGM
TMVSGAADPLSPREGLLSSSARSATMSMRRSRTSRSQQGHRSKGLSTATYSSHSDKPDEA
ALTPTVIVEPGRPSMLESRWLSEMCRGKDKVVVDKFERIIRMLNGRHHLDEIRFRAQLSR
KHLQSVLSTFEDHLILFTHP