Protein Info for mRNA_7091 in Rhodosporidium toruloides IFO0880

Name: 15459
Annotation: ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 922 transmembrane" amino acids 221 to 239 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (922 amino acids)

>mRNA_7091 ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 (Rhodosporidium toruloides IFO0880)
MQGPPPPSGTPPISRSPSPVTEDPGYIQAQVAGRPYVSAASLRETQLAREAAEAAAAEEA
QAEMERQRIAAVQQAGVRIERGTLGRGAGLTAAELDKTQENPYKERVVQPVEDSPATYKG
TRDELHISVTELEAAQDALITKQAKELIAKRFDRDERKRPRRVNVPAPPWPCSDLVENDY
GDVLHLATETSRAASTSTDAPSQRRPIRIAVIARDSRIPTTWVGAFGQVLAALFIWALVQ
IGRGFGRFVLGLPPHAFQVCAFVQIAQAATPMGQWIVRYSNFIPLPNQGVNYRALYPTFH
HHIVLGAIGNGFTLAGIFLPGGGGGGGAPPPGGGAGGPPGGGAAGGGGGGAGGPPGGGPP
GGGPQGGPPGGGAPPSGGGAGGLGGGGLGGGAGGGTGGAGGGAGGGTGGGAGGAGAPPGA
AGGSSAPSSSSASPKTATSSPSSASTSASSHVQQHRTAPSITTTTRGNRVKAVGTKVREK
APAYSGLTRDRYASGDPPAKESAMWHYLVEDEEALEKYKSEKNKGKNVERPAAVCFSFNK
AERDEAVAAWDRGWTPKSSTPSAAATAVLHKLEAERAPRQTASHEFRDALKRVQERIGKQ
QVTKGGRNVGVVGGARVAGPSIVIRDPSGRNVLKDARRRREYPPGTRLMPSKSSYSVSKS
GEQLYEEVYTCIATCGFEGSKGDLRQHLKGSGDRKAKEAKTKRDSKMRCPAFEELADNVF
AGELSLLERQAYNLSLHPSAFPCPSCPRIFKTTTTLGIHEKRHRDGKLTASGCPIQRRDK
SKWIGTDDPLPYPMPPAWFDACSKREEERAAGGWEYPADNPPLFRSDELDASFARPSRSL
GKRRAVQEESDEEEGEIFESESSEEEEEPEPDEEDELEEEGDFASDEENEFGRQEQQDWV
AENEEDEDWGEELGGVEEESHE