Protein Info for mRNA_7099 in Rhodosporidium toruloides IFO0880

Name: 15467
Annotation: K12845 SNU13, NHP2L U4/U6 small nuclear ribonucleoprotein SNU13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 PF01248: Ribosomal_L7Ae" amino acids 22 to 110 (89 residues), 88 bits, see alignment E=1.4e-29

Best Hits

Swiss-Prot: 89% identical to SNU13_USTMA: 13 kDa ribonucleoprotein-associated protein (SNU13) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K12845, U4/U6 small nuclear ribonucleoprotein SNU13 (inferred from 89% identity to uma:UM06360.1)

Predicted SEED Role

"LSU ribosomal protein L7Ae" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (129 amino acids)

>mRNA_7099 K12845 SNU13, NHP2L U4/U6 small nuclear ribonucleoprotein SNU13 (Rhodosporidium toruloides IFO0880)
MYSQAETNPKAFPLADAALTNQILDLVQQASHYKQLKKGANEATKTLNRGICEFIVMTAD
TEPIEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVIAASITTNEARELKSQIDTI
KGQIERLLI