Protein Info for mRNA_7108 in Rhodosporidium toruloides IFO0880

Name: 15476
Annotation: HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1366 PF02752: Arrestin_C" amino acids 623 to 786 (164 residues), 32.7 bits, see alignment E=4.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1366 amino acids)

>mRNA_7108 HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296 (Rhodosporidium toruloides IFO0880)
MDGSAAAMSGLGITFEPQAVYYEVPQHVQQPYYAQQPHYAHSSAPHGRRLLHSVSHDDGL
RHYMYAQQQYMDMPTDYSPDSAQKRVRIAAGTPEVLNGKGGYLPYDPNHLSPLSDFDPSS
TSEAGSSQPFSPASLSSLPSSTESGAYATFQQPSQHSAPIYPIRHEVPHAHEHDGNRRIS
LHANQPLHHSPTESRQSPRPSRLPAFLQERQAPPTMQRPRSMVDLRASQKQAAYGYVCVD
LPLPDLVHSTAVVGPGDADQQGDGEKPRMRQSEGRPRRLPPPAKAPPTDRVRSRSLSAQE
LRQLAHADTLREQGASAVTGVSGESGGADAPHDEQPQEPATSADPSVEGSVNADLRRQPT
LLTTGASTVRRRKELDRLLAPSQKHLSFGSFASSHEREESTPASSSTMPTSHRRAASESS
VLPTSLPSPAALEQAKGSNRARVELDLVLETPLIVEGGHLRGRLDVRIRQPRGREEAVWI
SKPKIRIIGFEELSSGDGRYVFFHHAATIDSPNGARSPLPCFDSDADEEDFHRARVGQHN
APVEMLVPIGRGAKGPWKGKQGVVRYIAIASIKLKSKNGSDRSIAHFYRHVDVFPYFNPA
LVLAPAVAPLSEEASKAVFMGGNGRVSLRATMHRGIWVAGQRCYVNVRVENESSKKVKAL
TLSLIRTTAIYRSDIKPSPVASPDLYGFVVDKGASSSKGLLQSTKKKVADMTLEVGKKGT
KGVTAKGTWLGVEAGECADFAPSLLVPADALTIPRGRHLEITYAVKVSVGGSLSADVAVE
LPIRIVDFVSLDPPPGHIGPSPLPERPQRPVARSWSSNQLRDVSNMQGRTLPHKPSTDNL
TLDDLNGITRPAAGLSRMSSLASVRTTDLPRDPQAFEDDESSGMSHVAVDDHDQGQDRSH
VLVDRARQRQLRHQMSLQCISTAIASATARKQGIVRQPSLLSYERREEATIVEEPGAEET
YGGATLAEANYGVQLDDLDDIPDGLSPVAEEIEHVELVREGEYDEELDMLMHSRFSDDED
AADDVPYSHRFGLAPPTDLTEIKVTPPTPAARRFSLSIATASSSPVKASSIRSSDSPKVA
RVASPAKSPSDKFAFATPTSPVKARVEMPPTRSPSRQASRSAASPLRQGRPLPTPPVVRA
EPPAASEQEPPTLRKTPSGASLRRNPGILRKAASTRSLRMAGSPTESVSSYESSRAANVA
RSPSLASPRVSPIIASGTTAKFHAAMSPPPSSPSSPARKVVQSPSPALRATRSMAELRAT
SSAKPVSPRKSTVLPSVQNKVAALETRQATLTRLATQTAGSGRARVSNVQLARADSIMSN
ASSVAPSEFNLKRADSMASFKAPLFRRGVEDMPPPMPSLPSRHFHP