Protein Info for mRNA_7117 in Rhodosporidium toruloides IFO0880

Name: 15485
Annotation: K12868 SYF2 pre-mRNA-splicing factor SYF2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 PF08231: SYF2" amino acids 142 to 312 (171 residues), 184.8 bits, see alignment E=7.8e-59

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (317 amino acids)

>mRNA_7117 K12868 SYF2 pre-mRNA-splicing factor SYF2 (Rhodosporidium toruloides IFO0880)
MQPRKSARSKKGKQPEALPPAPEEVEAAVSSEAVDAATTPAEDAPVDDKVDEEAQEEQIA
AEDEAGEQDEAPAAGPSSGLSMEERMAKMKELRKRMNDSARANRQDVVAEMNAQRASART
LARLERKRQQAEAMGEKQRAVETGEDLERKKNWEYSIEDNEKWDKKQAKKARRADFSFTD
YDDIARRKYKKDLDDFKPDLAAYNKQREAVTQTDALVASASGGEVGPVLDNTGLYRDANS
FVYADHKPTDEQIDRVIGKLNSDIDKRQKRSRKRENEDQGDITWINEKNRMFNRKLARYY
DDVTRETRENFERGTAL