Protein Info for mRNA_7122 in Rhodosporidium toruloides IFO0880

Name: 15490
Annotation: K14791 PWP1 periodic tryptophan protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 603 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF00400: WD40" amino acids 334 to 364 (31 residues), 19.7 bits, see alignment (E = 6.4e-08) amino acids 381 to 411 (31 residues), 14.5 bits, see alignment (E = 2.8e-06) amino acids 469 to 508 (40 residues), 15.9 bits, see alignment 9.7e-07

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (603 amino acids)

>mRNA_7122 K14791 PWP1 periodic tryptophan protein 1 (Rhodosporidium toruloides IFO0880)
MTSLISSLSWIPRGAAAQHPTKYTVDASELERIQGLARGQLDAAKMELELARMMEADAEG
RGEEGEEEGEAEWEDDEESAAENGDASMDVEEDAAMEEDDADAATAAAAKAAKRIKAAAK
GGDAANGDAEKADDDDELAAYNLDTYDEESSSAAMGAFSNIKGLTYYGDNAEDPYITLES
KNEDEELEREELEIYPTDNLIVAAKTEDDVSQLEVYVYDDREENLYVHHDLLLPAMPLCL
EWLDFCPGRTSDDDKKGNFVAVGTLDPEIEIWSLDVVDGLYPDAILGPPPKDPNAPEPAA
PSITDSTPSTDASGKKKKKKKPKKPKKVANPEYHVDSILSLSWNRSHRNLLASSSADKTI
KLWDLARPTSSPALRSFDSLHADKVQSVMWNPKEPTVLLSGAWDGTVRVFDSRAPEAGVG
TKVDSDVECLRWDPWEPASFLVSMENGCVQAFDSRMLAVAKEPSSVQRGKSLWTLAAHDS
SVSSLDINPLVKGCIVTGGTDNMVKVWNVDEQAGGKRNISLVTARDLGVGKVFSASFCPD
DPTTLAVAGSKANLQIWDTATNPGVRSIFGDRLRALGKDLSKTGAGVVGLADDDESDVSD
DEE