Protein Info for mRNA_7139 in Rhodosporidium toruloides IFO0880

Name: 15507
Annotation: K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 573 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details amino acids 153 to 170 (18 residues), see Phobius details amino acids 179 to 196 (18 residues), see Phobius details amino acids 216 to 237 (22 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 321 to 339 (19 residues), see Phobius details amino acids 345 to 362 (18 residues), see Phobius details PF04142: Nuc_sug_transp" amino acids 12 to 73 (62 residues), 37.3 bits, see alignment E=9.2e-14 amino acids 108 to 362 (255 residues), 282.5 bits, see alignment E=2.2e-88 TIGR00803: UDP-galactose transporter" amino acids 124 to 361 (238 residues), 175.5 bits, see alignment E=6.4e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (573 amino acids)

>mRNA_7139 K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3 (Rhodosporidium toruloides IFO0880)
MGGPATFAGVPLSLISLVTLTVQNSALTIVLHYSRISVPKDKMYSAASAVLLNELLKGAI
SLSIAFRNAVKAAPSSGNDYSRLETADEHDRRRVSVNGDAASVERIQAGGRKMLREVFSS
DCWKLSIPACLYVVQNNLQFVAASNLDVPTFQVTYNLKILTTALFSVFLLRRRLSARKWF
ALLFLAAGVGVVQLQSSTASGSSSHGSHEMDKLKGLAAVFCACMTSGLAGVYFEMVLKGS
KADLWIRNVQLSFFSLLPAATAVFAPGFRLFGGGSATPSPTAGQPVFANFGGWAWAVVLI
QVFGGLVTALVIRYSDNIMKGFATSLAIVLSFCAGIILFDFQVTLSFLVGTCMVVASTYM
YNSPDAPRRSGTDSPLPSSLPSPSLAKGPFTPAISARGLSASNPISSHSYTPAANFPLHA
TASGTTPSMAEAAGFASASYRRSVSGPLGAQTPDHSVPVFPLDNRRSLEHTYSHSANASL
YDPPRDSVPPPAHQFAFPASVPASPQDPLRPLARARAADQAAANGTGMPERKDSMAVVAD
SMAGEGYSSGRAPGTPASPDPNVRSRSPLPRVA