Protein Info for mRNA_7140 in Rhodosporidium toruloides IFO0880

Name: 15508
Annotation: KOG1029 Endocytic adaptor protein intersectin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1386 transmembrane" amino acids 885 to 907 (23 residues), see Phobius details amino acids 1061 to 1080 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1386 amino acids)

>mRNA_7140 KOG1029 Endocytic adaptor protein intersectin (Rhodosporidium toruloides IFO0880)
MAGQQNAHRNAQPAQPSLAARMNSGAFLGSYSLGGTPVKAEQKPTLQASPPQPSQGPSLL
ERTNSSGSCGDGGSLLARIGGETVAETDTGSPGSAGRGEAGRGINLRDRLSKPQQPVATA
SPVPTRRQSFPPKDGSQANNASLTPPPRPTNPAKRHVRQADEVQAPSHAASPVTLADRIH
GSSTSSSAHRLVERPEPPVWQKPAATQPPQGHSFAPSNLPQRRPSSPPRDPRKSPPKGAN
KPLHPPPPSLTEAGPAYAQAPKVPSIQRLPPEHVAAQTASASVKQTTQRTASRSSEAGTP
PLPDTSPVTHSHSVTTPAPAAAVTPSAPSPVAVRPTPAPTSQPPAVTSNRTSASFTSSTP
SRQPIPLRPPSSAECGTPPPRPPRSNRDNESGTPPRPPPPTTRPPASASPATPAARSSHK
SPSAPSSAAPRTPKSEPTSPDFRARPLPPPRPPPYVPPAPTKPSLAELQRQADEAREAAQ
QAEREARRRRDQEAEENRKATAEAEAAEKKRREDEAERVRAEAAEKERARLDAEAKEHAR
LEAEEKERVRLEAEAKERARLQEEERIKREAEETARKERDAKVEAERVEKERLASERKER
ERQAKEETRKREEADKKARLDSELEAQEKARQEAKRKEDERKKKERLEEERRAKEAEAKA
KLDAELEAQEKERQEEMRKEEERKAELRKEEEREAKIAELAARQAERDRRALAAREEEAK
KAERERQELARLAALARKKKEEEERRRQAADDEARKKAEEESQQKAENEEKEKKRAAKEE
EEREAEEAEEAMWRKEIPPLWAATTYAWTVRPGCPATLSIVKDRDQVFAKQRKVGTPAVQ
RTSRKIIAEHMATYTHGTGGRAAYASRVRDYASFCRSVDVPPWPLSTVMIALFCIATAPD
GFALSTASNVVIALRNSTRNCVENWQVLPGLSELASWPKADQALTEWKNLLNPIPDEEDS
PVETPQGMSPAAFEPAYNVEDGDEEEDEEDVTDEDDEDGADLDEDEVSDSEAKGKPGRSG
KRVRRTAIEMKKFVLECTKKYPLPDMPAMPRQGQASPNLQALLKAVAVALVPTFGVTPAL
TNQIIACKRRTDGCPFRISTVKRADGKVVVKANSVYAHNHGIDQRLIADPNWRPAMRNDA
VAAAVAKHDKLMATKKSKKRLSDSSELPVAKHPRRESGTVKSDAARRKTATKAAAVERDE
PADPDLSTAAKDTLPPPASSDAPRDTEKPTQLDSGQHDVDIERSCAGETGSPAIKASSPS
TEPKPTDMTVVKADSSTPAPQLPSQPAIPPASSPASASSYRPSLEAFLVALHPSLAPLTD
PLLAAGITSDRSLALFAGMERSSRHALYEDLRIEGDMPMLDAAAVEALDEACSRAQATQW
AIKYPL