Protein Info for mRNA_7142 in Rhodosporidium toruloides IFO0880

Name: 15510
Annotation: HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1342 transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 122 to 144 (23 residues), see Phobius details amino acids 176 to 197 (22 residues), see Phobius details amino acids 544 to 567 (24 residues), see Phobius details amino acids 591 to 615 (25 residues), see Phobius details amino acids 636 to 659 (24 residues), see Phobius details amino acids 686 to 708 (23 residues), see Phobius details amino acids 734 to 774 (41 residues), see Phobius details amino acids 795 to 815 (21 residues), see Phobius details amino acids 821 to 839 (19 residues), see Phobius details amino acids 890 to 907 (18 residues), see Phobius details PF13967: RSN1_TM" amino acids 69 to 189 (121 residues), 55 bits, see alignment E=1.3e-18 PF14703: PHM7_cyt" amino acids 250 to 527 (278 residues), 44.3 bits, see alignment E=3.8e-15 PF02714: RSN1_7TM" amino acids 543 to 813 (271 residues), 133.6 bits, see alignment E=1.3e-42

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1342 amino acids)

>mRNA_7142 HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967 (Rhodosporidium toruloides IFO0880)
MATLDERTYSSTFSGLKSTAITSGAVIAGGILIKEILQRLRRYPDEDARRKQGQPVPDRG
VETWAMGYLYRARTYVAGLQTPDYSRWPLAWVVEAYKRDEHFYESHAGLDAATYIRFLRG
TLFFTTFLLLTAFPVLMGINFVYAASRFDTDSIDRASITALVDNQQGLFLLPVHTTFVWL
TTLAWFATLVWLGRGLLRMRRRELRKLLADSAERRQRLSETGAAQKPLDVAFSPELDPSI
TDDELGWRYRTVLVRNIPPRLRSEEAIRSYFERHLRESSPSSSTDQYPPISRDDKKLSQH
TDTPLISEVVLLRRQTELNELYFTKYQEVLHQLETAHVELARNVMDWVREEVRKQELAKQ
GLAPPMTPWGWIKEHIGRRRTAGDIEQDARAGDAALLTALRPFLDSATDLQSRTLWAALA
ALRSDHPSILDRFQPLIRLRRFRSASVPTVDYFLAKHNLLYSLIEDQRSQKETVEAASTA
FVTFARAEDARRARKELRYRPVGKIYGRMTLEWKVKMAPEFRDLHWHRLVVVSLSSDLLR
NSLLNALVWAVTIIWVLPISVLIGLLSLESLQQHVPSLANFLNDHSVARSLVTSLLPTAL
ISLLNMYTPTVIGILQRQGKTLITESKWSLVTQAAYWKFLVVNLLIIFVIGITAFSAFLN
AFRQPVSVLTVLAGAFPKASTFYTSYILLQTGVHTGIELSLLGISWINHASIRKYVAPRK
RTTEGVPRFFGQQSWLANHLFVTSLTLVFAVLNPLIIPFSFIYFSFAVLTMKQQFAHVYY
RRNFELGGRMIFRRVFRYSLDIAVLSQLVAVAFFWVLKRFAYGGACIPLIPITIAFKILG
TRYFDHLLDELDEAKIDIICGNGEDPQAQLSAPLPTEEEERRTASVGGTLRSLAFLATVT
IPSLALHPSAKLPSQKAVQLDQSHRKWQSERAAPSDKPEKSRTRANTAPDDWRRPMLEPV
ASSDEDSEASHMQTNQEQADKTDAGALPHSAALPETSATIQTGAAPPAQSDASSVVTPHA
PVIRDDRPVSHLRYRNPAEVVPLSRSLWLPRDPLKPVDLGDTVDYRGRALVSSEGGRGVI
GHWDEMEETAEEAGEPEKARRRSSALGDDVAYTVQGTERIRVAADVAARLSPRTSPGLVR
ASSPPSPHSTRHSPVLLRHPSAPKPSPPPIPSFEPSTASPDRAEPGYPFPESAAEPSATS
PRHSTLSVPPPSPSRLSRIITTSTTTTQPPTSPVGPGISPTRARTNRSASLVPSIRSFSR
FHAPAGAAIAEATEPSVSQAEALRSELLEEERRSHLVHAKREEHRKAQERKDREADANAT
AKDGWFRKLLVRHDEGAVDDDT