Protein Info for mRNA_7143 in Rhodosporidium toruloides IFO0880

Name: 15511
Annotation: HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 signal peptide" amino acids 1 to 13 (13 residues), see Phobius details transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 43 to 65 (23 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 372 to 388 (17 residues), see Phobius details amino acids 495 to 513 (19 residues), see Phobius details amino acids 519 to 539 (21 residues), see Phobius details amino acids 546 to 567 (22 residues), see Phobius details amino acids 573 to 590 (18 residues), see Phobius details amino acids 597 to 615 (19 residues), see Phobius details amino acids 627 to 649 (23 residues), see Phobius details amino acids 792 to 809 (18 residues), see Phobius details PF13515: FUSC_2" amino acids 511 to 644 (134 residues), 76.3 bits, see alignment E=4.8e-25 PF04632: FUSC" amino acids 525 to 684 (160 residues), 38.4 bits, see alignment E=1.2e-13 PF10334: ArAE_2" amino acids 653 to 814 (162 residues), 39.9 bits, see alignment E=9.3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (911 amino acids)

>mRNA_7143 HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 (Rhodosporidium toruloides IFO0880)
MPSRTIGGMVEADLFLSLAALFAIFLSCGSMAMTVFLDAYDLLTLGHALVIVLWIGCGYG
CLAFAKVVWAKPTVSTACSLVSLVCSPIITKEGAFLGEFQTEAIKRVLLIALVGSVISNL
VCFLVWPQSATTQFQTDLDRTLDSFSTLLDMLARTFLLDPDYAITSTELKRAIETHKSTF
TTLRTSLSQAKYEVFDRRISGRTTIYDSVVAKMQHLAQGLTGMRAGCSLQFDILRARERG
VVVEAGDDGLLDEIIVLERFKERVEPSLRQVVASSKRVLHALKAPANSMADDLEAPTSAS
EDLFRLQQELEQDLALFRREHSKAVKILYRSLPEKTFFGGDLESSLAQGETGGAPNENLF
RIYHFCFNLEEWAGELLALVSIFIRLRATDEAMRQDLRQARARWGRIANVGSVLASISTG
RQFDSTLTQKAEQLGRQFSRALQTPRSKHRSVFPEIIDGALSSHQVDAAELPILARVKLS
LWHLAYHLRQPNLRFAIKTGAGAAILSAPAFIPSLRPLWLTWRGEWSVISYMVIAAPSLG
QTNFLAFGRIAGTAFGAAVALACWTAFPENALVLPVLGALFSAPCFYVAVSRPHLAATSR
FVLLTFNLTCLYAFNLREIDVPIGSIAFHRSAAVIFGVAWGLIVNSYVWPFEARRKLRSG
LSEFFVNISHFYERIVRTYSSAGDLAEDATDFGETSPLLRSEAEDLFSSMELELQLTLIR
VSALLSATRHEPRIKGPFPVAPYRDVLAACQSMLDSLTAIVRMTRRDAWLKVVRRDFVLP
VNEQRREMVGNVILYLALLSSAVSAKTPLPPFLPPAKQARERLVAKLRDLEVVKRRLVRG
GSESLLYYAYTTSMQDVIAQLDLLGAIFQRLFGIVGGTTVSDFDALFLAPSAASSQFHED
DSDSTSSHHLL