Protein Info for mRNA_7150 in Rhodosporidium toruloides IFO0880

Name: 15518
Annotation: K01874 MARS, metG methionyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 PF00133: tRNA-synt_1" amino acids 38 to 145 (108 residues), 28 bits, see alignment E=1e-10 amino acids 280 to 385 (106 residues), 32.8 bits, see alignment E=3.8e-12 TIGR00398: methionine--tRNA ligase" amino acids 44 to 538 (495 residues), 376 bits, see alignment E=1.7e-116 PF09334: tRNA-synt_1g" amino acids 44 to 418 (375 residues), 291.6 bits, see alignment E=1.3e-90

Best Hits

Predicted SEED Role

"Methionyl-tRNA synthetase (EC 6.1.1.10)" (EC 6.1.1.10)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.10

Use Curated BLAST to search for 6.1.1.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (578 amino acids)

>mRNA_7150 K01874 MARS, metG methionyl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MVQLRVATAPLGPRLRAAAAQTPRACPLLARQSSSLASSDKQFYATTPIFYVNAAPHIGH
LHSQLLADVYTRYSRWRNPDKGAVMCTGTDEHGLKIQRVAEAQGIPPKKLCDGVSERFKD
LARAANVDYQIFIRTTEERHGRAVEHVWRELDKRGYIYKSSYAGWYAVSDETYVPEDAVG
EVIDPKSGEKYMVSTETGTRVEWMEEENYKFRLSAFREPLLEWLRSDASPVQPPPRADAL
LAELTRPGNTFLDDLSISRPASRLTWGISVPEDPGHTIYVWIDALVNYLTAAGYPWQGGE
AFEKGKLWPPDLQVVGKDIIRFHALYLPAVLLALDLPLPKTLLTHGHWTMDSMKMSKSRG
NVADPFEAMQFWGVDTIRMYLMWWGGNSGKDADYSTATIERFYKKDLEAQVGNLASRITT
PKVLKKLESPELLWTMPTTIEEDDKKLLGLLQALPATYERHLATFRVDEAIQSVFDAVRE
ANWHISHVQPWLKTTSPSAVHRALFFESETLRIAGILLQLIMPEKTKVLLDVLGVDPARR
RFEDCEVGKGGERTPPTERVQVFPTVVAPGSATEEKGK