Protein Info for mRNA_7160 in Rhodosporidium toruloides IFO0880

Name: 15528
Annotation: HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 804 PF00076: RRM_1" amino acids 419 to 484 (66 residues), 21.4 bits, see alignment E=8.8e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (804 amino acids)

>mRNA_7160 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 (Rhodosporidium toruloides IFO0880)
MAEMDPTGDALLDPTTLSAQGKTDALVEAVEANDLLALVLVLQYAEPAEVNGHASSNGRT
PLETALSFPTFRSDIRSFAIQGLLHCGAVPPPPLNAYAPDYARVVREWESGGREQAVDAF
QLVRVWTLEQVDAWIEEKGLGVDEQPGASVEGEQPTTDGEALASTPIPQPQAKEEPASPT
IAILDVSSAQPHEVQDPVRTTTTSPAPPPPRQGSPPPAPPPPVALSPPAHDPPTSRRRSQ
APSDASKAGPAPPRASSQTASGSSRPRVLFTGLPKHVPLEEVCKLVRTEIKYYPEARFTT
SRQPDAVDAIVELRNDHEVRLVLRRLNGVFLRNRKVGAEALPPPSAEAPSTGSLRQEERG
RGTLLSPRRRSLSPRRRSSPPPTRRERSPSPHHSSPRQASPSTQLRRAREPSDSLVWLHV
SNLSRSAAERDLYELLARARLPPEDVYVHHAIKQPFRFAFVGFSDSRAAEDAMDVIGARL
FNGQRPRVSFFRRKDGETQPFEGRHAAPRFPYAGPARNQTNTPAPDYRDLIIYGIAPYSQ
EQDLRDFIEAKIGRGSIRRLHLEANSFAEDDRKALLEVDRHSDALRALDRVDGSLFKGQA
ITVNWAYTSFANDRAAVDDQLGAARSSRSPTRHSPSPLHPASSHAQPPASPSQPPPSPPQ
TTAAVATKDRVRDVAQPSSKPEDLDALRYLGLPPPDLEAISQMWAPLDEAPLGRYGKPFD
RHLRTKIKFGFVPQQDAEAALQDERMRTVFKDDPVLQQRFEVFLAAQAGRSKDWYLTFFA
HIAEFNRLSRLFSETARRDAAKQS