Protein Info for mRNA_7164 in Rhodosporidium toruloides IFO0880

Name: 15532
Annotation: K13117 DHX35 ATP-dependent RNA helicase DDX35

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 PF00270: DEAD" amino acids 53 to 207 (155 residues), 28.7 bits, see alignment E=2.8e-10 PF00271: Helicase_C" amino acids 293 to 419 (127 residues), 50.9 bits, see alignment E=4.6e-17 PF04408: HA2" amino acids 481 to 569 (89 residues), 72.7 bits, see alignment E=7.1e-24 PF07717: OB_NTP_bind" amino acids 629 to 708 (80 residues), 65.6 bits, see alignment E=1.1e-21

Best Hits

Predicted SEED Role

"RNA helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (716 amino acids)

>mRNA_7164 K13117 DHX35 ATP-dependent RNA helicase DDX35 (Rhodosporidium toruloides IFO0880)
MAFWKPGTVAPGSSIDRDAVNQESAGGGAPAVTGRIERIAVSERRGRLPIAKQRDALLYL
LERHPVVVLQSPTGTGKSTQLPHFLLEAGWAKDGKCIAVTQPRRVAAISVAQRVAEEVGC
ILGEEVGYSVRFEALCTPDTKVLYVTDGMLFREILLDPLLSRYSVVMVDEAHERSSYTDL
LLGVLKKIRRVRPELRIVISSATIEAQEFVDFFNRTTHSSSHPNSGLNPGEDILAPPPAK
KSRWDKKEKEEPKLDEAVMVRLEGKAFPVEIAYLEEPTSDIVMKVVETVFDIHLKYPVGD
ILVFLTGRDEIDRCLQQIADYQHRLPQGAPLIKAFPLHSGLSTESQIAVFEPAPPRTRKV
IVSTNIAEASVTIDGIKFVVDSGLVKLRSFDPVTGMDALVTTPCSLASLAQRAGRAGRTS
PGKCFRLFPASALKTLLPTTPPEITRSDISLLVLQLKSLGIQNILRFDWMTSPSSTMLER
ALEFLYCLGALDEEGKLTKPLGVRMAELPIDPMMSKILLDSHSFGCSDEILTIAAMTSVQ
NVFILDDGDSIRGELERRKFTVEEGDHLTALNAYNAFIKHGRKSSKWCHNHRLNFKALSR
ALSIRTQLSKYLKRFDIPIISCGSDHAKIRRCLTSGYFRNAAVAQPDGTYKSVREGAVLH
VHPSSVYFTRTPPSSFVIFHEVIETTKRFMREVTAIEQDWLVELAGHYYQFRESKR