Protein Info for mRNA_7165 in Rhodosporidium toruloides IFO0880

Name: 15533
Annotation: K01867 WARS, trpS tryptophanyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 TIGR00233: tryptophan--tRNA ligase" amino acids 51 to 409 (359 residues), 269.6 bits, see alignment E=2e-84 PF00579: tRNA-synt_1b" amino acids 52 to 362 (311 residues), 214.7 bits, see alignment E=9.6e-68

Best Hits

KEGG orthology group: K01867, tryptophanyl-tRNA synthetase [EC: 6.1.1.2] (inferred from 52% identity to scm:SCHCODRAFT_16984)

Predicted SEED Role

"Tryptophanyl-tRNA synthetase (EC 6.1.1.2)" (EC 6.1.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.2

Use Curated BLAST to search for 6.1.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>mRNA_7165 K01867 WARS, trpS tryptophanyl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MAGGAQRRALRALLNHSGAPRSYSTAPTPSAPPPPPATSASDPTSAQPARKKRVVFSGIQ
PTGVPHIGNHLGALAQWQRLVKEVAAQPEESRDELYFSVVGMHALTVPQDPVRLRQERRD
MFAVLLALGLTDPKTGAAVFHQDQVLEHGELAWYLNTVTPVNRLMRMTTWKSKLVTLRNA
KSEDEIDDSMLQLGLLAYPVLQAADILLYKTTHVPVGHDQSQHLELCRDIAQVFNRAYPG
RRRDGKGKGKGPFRMPEVMLTTHPRIQSLRNPLQKMSKSAPSEASKIYLTDSPEAIHSKI
KTAVTDSIQGVTWDPENRPGIATLLQIYEGYSGEPVEDIAKRYTGQRGIMEMKADLAECV
SEGLRGFREEFARIRTEEAYLREKEREGADKARATASRTMEDVRAAIGLD