Protein Info for mRNA_7184 in Rhodosporidium toruloides IFO0880

Name: 15552
Annotation: K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 PF01111: CKS" amino acids 15 to 91 (77 residues), 119.8 bits, see alignment E=2.4e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (141 amino acids)

>mRNA_7184 K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1 (Rhodosporidium toruloides IFO0880)
MPSDDVTYQDLVDRISYSDRYSDDEYEYRHVQLPRQMLKLIPKDFFEPDSNVLRLLTEDE
WRGIGITQSLGWEHYETHAPEPHILLFRREKDYQKKYGNGMRETRLVSLTRAGSGFEGWH
FIVDVKSLRQHYSQTRKTGER