Protein Info for mRNA_7193 in Rhodosporidium toruloides IFO0880

Name: 15561
Annotation: K03678 RRP45, EXOSC9 exosome complex component RRP45

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 PF01138: RNase_PH" amino acids 32 to 164 (133 residues), 68.8 bits, see alignment E=7e-23 PF03725: RNase_PH_C" amino acids 191 to 256 (66 residues), 39.4 bits, see alignment E=5e-14

Best Hits

Swiss-Prot: 49% identical to RRP45_SCHPO: Exosome complex component rrp45 (rrp45) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K03678, exosome complex component RRP45 (inferred from 60% identity to cnb:CNBC5230)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>mRNA_7193 K03678 RRP45, EXOSC9 exosome complex component RRP45 (Rhodosporidium toruloides IFO0880)
MPRDPDPSLNESTFVHTCLRKGLRLDGRGMYEMRAVEVRFGEEFGWVECRLGGTRVVAQV
SAEIVKPLPDRPYEGFVNLVTEISPMASAAYEAGRASEDEVLMTRLLEKALRRSNTVDRE
ALCIVAGQKVWSIRVDVHFLDDEGNLLDCASIAAMTALRHFRKPDVTVVGEEVTVHSMTE
RVPVPLAIHHSPMCLTFAFFGDDSLAVLDPSHLESQLCTGTLTLALNSQSEICVLSKQGG
APLGADEVIRAVSIGVERVREVE