Protein Info for mRNA_7195 in Rhodosporidium toruloides IFO0880

Name: 15563
Annotation: KOG0519 Sensory transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2650 transmembrane" amino acids 1462 to 1481 (20 residues), see Phobius details amino acids 1503 to 1518 (16 residues), see Phobius details PF07714: Pkinase_Tyr" amino acids 226 to 486 (261 residues), 25.8 bits, see alignment E=3.1e-09 PF00069: Pkinase" amino acids 241 to 490 (250 residues), 42.6 bits, see alignment E=2.5e-14 PF13191: AAA_16" amino acids 575 to 760 (186 residues), 113.7 bits, see alignment 6.6e-36 PF07693: KAP_NTPase" amino acids 594 to 742 (149 residues), 18.4 bits, see alignment 5.7e-07 PF13185: GAF_2" amino acids 1770 to 1916 (147 residues), 38.4 bits, see alignment 7.7e-13 PF13492: GAF_3" amino acids 1772 to 1916 (145 residues), 31.6 bits, see alignment 9.5e-11 PF01590: GAF" amino acids 1774 to 1914 (141 residues), 33.9 bits, see alignment 2.4e-11 PF00512: HisKA" amino acids 1990 to 2053 (64 residues), 59.6 bits, see alignment (E = 1.3e-19) PF02518: HATPase_c" amino acids 2101 to 2218 (118 residues), 93.8 bits, see alignment (E = 5.1e-30) PF00072: Response_reg" amino acids 2391 to 2504 (114 residues), 95.4 bits, see alignment (E = 1.2e-30)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2650 amino acids)

>mRNA_7195 KOG0519 Sensory transduction histidine kinase (Rhodosporidium toruloides IFO0880)
MPPPPPSSSSSTDNKRRRLSTQLSPASLRGPSPRPHSPLRDSHGSNGRGTAEDGREGPGA
AEGGTLGLGIDSRLPAPSASSSTRRGSLNFANPSAAPAAELTSSVLLPPPSPTSALHPPH
SHSHHHPPHHHHPHPHGTTRTAGGAGASDAPRPSKRPRLASHNSNETTSSGTGGTSVNWT
VTPPVGSGSRASGSSAGSERVDSGSVSPGDEIRLDGYRDVQVLSTHYDDVVACRAISTAR
GDQRVALKFSLSGRPSVAAQFKAEAALLGKLRAAGISNITKVLARENGRYGLMLVVANDE
FRMWSETYHLRNRPPAPYWTDPTALVRAIGNAIQLVRLVASIHKVGIVHASIRPTTVSNS
NFGQVYLHDFSCSFASSLSASASEIETTPIRERGMKEESLPYLAPECSGRVGKTAGYQSD
YYSVGATLYEVFTGQVPFVDATDPLEIVHAHIARRPPLMTTVDSSVPHALSLIVAKLLEK
SPDARYQTSQGLIVDLERVKELVLAYSSPTPTHANSSSVTGSSENGRSGSGSGAVGREVS
PMSASTTDLGHLGADFVPGSLDEAAYFRLPPASMLFGRDESIRALRDAFERVKTSTQPAV
VVVKGNSGIGKTSLIETLRAPAAETRGHFTSVKFDQIKSPVPFFAITQSLSGLFRQLLSE
PEAQLAVWRRRLTRALGKEARVIADVLPTLEQLFESGWLEKQPQVPVLNPQESEERFRGV
VQKVLRAFARAGKPLVVVFDDLQWSTLSDLAFIRSLALLGSDEAEDPLSSKTTCPMLLLC
VFRDNEVGPDHIVETDLLAKLPSPPLTVSLEPLNIANISSFISQALRNPSESSSSARSQS
RTDRVDASIQRLSELILERTNGSPLFVAQLLKAFNAEGLFSFNFSRGAWEYDLDLIASKS
VSTNVVELLQAQMGKYPAQTQAALKVAACLGNEELNAVTLAKAAGRTLEEISRDLQEAVQ
EGLMVPFGEVPVDPEQVATLEAQGVVPGSPNLRRRKSVIEGGKGVNMAVELLRPKLQRRK
ESVLQKPPVPETYRFFHDRCQQAAYALIPKTARSGLHYTIGQRLVAAFTEEEINDSVFDL
VQQLNYGMDILATTEERDKLAYYNYLAGRKANSSTAFEAARNYLQIAWDLLGVGGWVGQY
DLMSNVVELLVSVEYSLTDYGAAQEYVRVFLQHSRDTVAKLRVYAIAIRCASATGDSAKA
IDVGREGLATVGHVFPETAEAAEALIVEVREKLALDVETVEHQRFTEVPLLVDPVAAGCQ
AILAALVPPVYFVRIDLLGALSSLSLRIAVENGFNDAGAFCLTLHAILVRAKFGQERESL
AYGKAAISFFEKYGGSPLACPTYKVFSSHVAVWSTPFDDVFATFRQAVSYGIEYRDAEYL
GFGCGELSSYSLLAGVSLSEIGSNIERYAVLVRKFRHELSTTYIGVVQQAVLCLLGRAAN
SLELDGEAFTLDDYHVCQERRYSLTILLFHMLRLMIAVFFGDSTRAKESIAIGRNHLSGG
QGLIYPVFFQLFEAVTLYDEYDALSLEQRNHVCDAHVLMDDLAKAQPDNFLPLKLMLDAE
RKRVSGPAVEALPLYDEAIAAASTQRMAHLAACMNERAASCLGSIKLRAGYLIDAHALWA
AWGCAPKVSKMEADYPLVFPTRPILPSAHQPIPASTPPLSVNVVQTGELGEASTKGSSST
DSTEQAVGSASSRAAEEIHSLHSWMNETKEQRHPSTGSHGSRSHSEHHDADMVSHSRSID
HSDIYARSQLATELDLRTIVTASSVISGELSVDGVVSKLLNLTLRTAGAEMCLLVLDKNG
TLCAEAIARSESSEVQHLRRTDAIDSQPERYPCAVLNYVARSKEMVVNTLDALGESVQDP
YLQARKPKSILCLALASQQRIIGVLYLENSQTTNAFTPDRLEILSLISGQAASTIEKARL
VQDLKKTNQDLQRSQAALEASNRNLETKIADRTLELRHNNALLQAEVAEKERAQAEMRHA
KEIAESATAMKSQFLANMSHEIRTPFNAVVALSSLLLETQLTPVQTDYVETIKNSSQELL
VVINDILDYSKIELDHLELTYEPVHLRAVIESSMDMVAERAATKSVELALLIEEGDIYIM
GDLARLRQIIVNLLSNAVKFCSDGEITVTASSRPADPDEKRQPRRWCSISVKDTGIGIAK
ENFGRLFRVFSQAEGAETSRNFGGTGLGLAISRKLARLMDGDLTVESELGVGSTFTVEWL
APASSAPEQDPYARNANRDLIGKRALIVDANATSRMVLSQLLTSFGLLPEAPAEHNNAFS
MAIDAAQKKRPYDLVIVDAFLPSFAAQTLLRRLRQKGLDSPAIALTRMGSPIYEEMRQLD
CKFLIKPIKRNRLHHTLRLVFPAGEASRVSSPAPGSPAFPTNLATRNPLAILVAEDNPIN
VKVISHLLKRMGYSCDVAEDGLAAVEKAQRKRYDLILMDLNMPRMDGLTATRRIIELMPD
PVQRPSIVCLTANAMAEDRQKCLDAGADGYVSKPILVPELVSALNSASAKRAASYGPSPI
PPAPSSGSGLPFELELPTSRLGRGSRKNSSGSNRSTSSKGTRSGPPSPSPEPSSNNGNGV
AKASSPGGTVSHASAAVMAASGLQRIAKELEAERARSSPVSSDPKSPEPGSASAAQASPP
PRDTMDQSEA