Protein Info for mRNA_7196 in Rhodosporidium toruloides IFO0880

Name: 15564
Annotation: KOG3329 RAN guanine nucleotide release factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 PF04603: Mog1" amino acids 4 to 153 (150 residues), 127 bits, see alignment E=3.5e-41

Best Hits

KEGG orthology group: None (inferred from 44% identity to cnb:CNBG0130)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (196 amino acids)

>mRNA_7196 KOG3329 RAN guanine nucleotide release factor (Rhodosporidium toruloides IFO0880)
MAQRQLYGGAITTTIPPSFIDASDLRQVPDTQEVFLAPDSDLSLITEVLELVKDDGAGDD
LERAVRFHFSSLAHDNSALSSSVTSVSLPSSPSAPHPQGPGLPTILGPAVLSGLQTISKF
NRPASEADTVLILLALWRVPQRDADVTLCVNWPVKDGETGEERSEEEARRVFEEAVRAFD
VKDFGLFAGGEAAAGA