Protein Info for mRNA_7210 in Rhodosporidium toruloides IFO0880

Name: 15578
Annotation: K15271 HFM1, MER3 ATP-dependent DNA helicase HFM1/MER3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1529 PF00270: DEAD" amino acids 347 to 517 (171 residues), 88.5 bits, see alignment E=9.5e-29 PF04851: ResIII" amino acids 355 to 485 (131 residues), 44.3 bits, see alignment E=4.2e-15 PF00271: Helicase_C" amino acids 574 to 720 (147 residues), 34.8 bits, see alignment E=3.7e-12 PF02889: Sec63" amino acids 840 to 1147 (308 residues), 85.3 bits, see alignment E=8e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1529 amino acids)

>mRNA_7210 K15271 HFM1, MER3 ATP-dependent DNA helicase HFM1/MER3 (Rhodosporidium toruloides IFO0880)
MQNASSRPPPRTVPTHRPPNLHPASAFAPPPEAFASAHKSSSSIYDNDEELEEYLATLGE
ADEESEWMGGTGHEDGEQEGFAHTFAPFSTSSSPTPRFNDNIAQNASLRFASNYEGDFGH
GPTSNYYAQPAAPVATPPPAGRPSQAPRRSFAAAPHQPSSSHSVIKPMPLRPAALPAQPT
AKSTAPSRFAPPSRLQGFDQPTTSYGSTGGGYAQPRQVAQASSHERFRQDDGEEEYWEDE
PGWGAGGSSNQQGRRGGNSWEDALMAHDGAQAAASQSRNFALTSRQPSKADEDVQYLEDV
EAALGGPSRPKAASGTIRAQKKGIKLRPVSELPDIFRSLWRFGVFNAVQSLSFDTVYHSD
ENVVISAPTGSGKTVLFELAIIRLFTQSDVSDAKVLYMAPTKSLCSERVADWKRKFEQTF
GWIVQELTGDTDAVAGAWREVANASIIVTTPEKWDAMTRKWHDHGTTLGQLRLFCIDEVH
CVGTDVRGAVLEVVVSRMKTLGTDTRFVAVSATVPNIDDIADWLGVGAHEEGHKPAKAFT
FGDDFRPCKLQKIVVGYPKGGNDFAFANGLNFKLFDLIKQYASGKPVLVFCNTRKGCTQA
AEALAKAYKDSLSSSTGRASLAWPKPSRYDFRTSDKNLAGLLENGLAVHHAGMDANDRRL
VERAFIEGTVSVVCSTSTLAVGVNLPARMVIIKGTKAFIDGQLKDYSDLEILQMIGRAGR
PQFDTLGVACIMTDKASESRYANLVNAQSLLESGLHKSLTEHVNSEITLGTISDIPSALR
WLRSTFLFVRITKNPAFYAIPGIKSTPEARLEELCLEAIKELVGSGVVDEDGDKLAANHF
GDIMAKFYISHKTFLAIKELPVGANMRTLLETLCSSAELGSFRFRQGEKSVLAKYNKNLR
FPTEKVATTADRVMILIQLVLEGIPGSELRNENINPMLDARGIFAAAVRVAKCMVDVAVE
REDGAIRTMLELLRSLNGKCWDASSFVLRQLEGIGEKSYKVLVSSGIKSFEDVRECEPER
LEILLNRKPPFGRKLIAQAKSIPQFEITVVSQHEHVLDGQGVQLEATIDLRLKQTKPLPA
TKKGPMKLWATVASSTSDGTFIDFRRTRIDQLLAQPKQFDLAVVLVKPSQRIVISVSCEL
LAGSEVKLVVKPESKASDFPIPSLGPSEDSDMEESTELMFPTHKKRPSEKAKPQAMPESV
PQAKKAAGPIKPTVTAAATPPAPRQRPDGRYECNHSCANKTACKHLCCREGLDKPPVKRT
KSKTRPPVVNKGSVGETTNTSKQSSASSAPRQQPLRLQPAPSSRVTLNKTAGGRFITSHD
EGDEDMSDVEALPAIDKRSKSKTTHRVDAHAAPVSDETVQLDSTPSPPRRPPIEPTEPRP
PKVKRSLLQTDRNSEEARKRRRLSLREFASSSPIDLSNTPAVAPKSRQASMEKTEDSLFR
LDSPDSSNAIATVRMDHDEAAFDFPFSDDEPAFDDFAASAGETKAEQADFESGAMEETTL
EDSREEADEGTGGDEDDFDAWLAKSVVVV