Protein Info for mRNA_7223 in Rhodosporidium toruloides IFO0880

Name: 15591
Annotation: K19983 EXOC1, SEC3 exocyst complex component 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1164 PF15277: Sec3-PIP2_bind" amino acids 44 to 135 (92 residues), 64.7 bits, see alignment E=6.8e-22 PF09763: Sec3_C" amino acids 459 to 1140 (682 residues), 574 bits, see alignment E=5.1e-176

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1164 amino acids)

>mRNA_7223 K19983 EXOC1, SEC3 exocyst complex component 1 (Rhodosporidium toruloides IFO0880)
MAQDHSRAIIHSLFSPNKETGQPAQESFIAYVQTSEDQPGSTQRKSRFLILSALRDGRYK
LHKAKQNANGSFSIGKTWALEDLQRVEVGKRLVSGRMQPLEFTLVINSKTYRYDTELPSS
QQAMFLVTVVRCWRRYMNGRGQPDLVLVGFSVDATNTGSAPPGPSSAAPPRPPRPSVSAA
SGQTASGYNSQRPSYSSQTGPDRPPPRVENGQPPSASAPPPRPSASRSASGSERGGQDPY
AARQPQAGPRPSNASTYSVNGNRPPSPRRPSGPSLADSTSRAPPASVPRPSGSSLSSSTS
AVPPHLQPQNQQRKPSGIPPDARPPPPPSSSSAMGRDVSAGSAGSAKREVVGIGIDFGGS
GMNGGGEKKPQPGATRPSTGGGDPKSRPSTSGSAQPPAASTPPIPTRKATTDEALDSETV
LSNVEEMLEGFEWRGGLGGSSMSVGGDGSMVAGGKSRSKADEMERRLISELKALEAASIH
AIMESDDRVVGVVKQLDDAMAELDKLDLMIGLYKTQLNLMTDDIAHIESQNRGLQVQTSN
QRALLSEIDKLMSTIHIPESDLSALVQESLESQQGIEKLERSAVSLYKALLSTRDTAVGD
MAAASERVGEYRAKASQFSKRVFDFLSIMFKFQVDQVLNPKDPSTRAAKGTLPTHSGLED
FLGRYCGLMLFIKEIDQQQYQQICSAYFTAMSDLYRREIQDLMNHLRGQVKKATDDELEA
SFTAKESPTLRQQSIKRVGTIARSPLEGGKKEKDRDGKFTASEAFTRALQQITPHLGREQ
NFISDFLHINAIDASITFADYMMLETFFRRGASNYLAEQAKQGKLKDVRAAMELVFGFFE
GELRDWIEGVLQKDSMQIVGILAVLDRFVLRGEEDHNEFLSRTLQKQYQRSHAALERSCK
EQIRSIEQTKLTLKKRKGVVPFVRVFPMFVARIESQLDGADDLNIRKIVNSQYERIVATM
FDCLQQMAKMDGEGHGSAGEGKDQLNYHVILIENMHHIIAVFSSKQKVPALAPFVSQARE
KYDQNLAAYIRLILRRPLARQLDFFAGLERLLRTTPPTEVSLHSAYTRSALRRVTADIRA
KDLRKAIDALYKRVDKHFGVDVANQAAEHTDVLKTVWKACEDEVTKTIAEWKNLVAKCYP
DEKGGGIEVGRQEIHTFFSNAHIP