Protein Info for mRNA_7227 in Rhodosporidium toruloides IFO0880

Name: 15595
Annotation: K03239 EIF2B1 translation initiation factor eIF-2B subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 PF01008: IF-2B" amino acids 38 to 335 (298 residues), 173 bits, see alignment E=4.1e-55

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (348 amino acids)

>mRNA_7227 K03239 EIF2B1 translation initiation factor eIF-2B subunit alpha (Rhodosporidium toruloides IFO0880)
MALPAVDEDAPLVTPSPQSFDVVKHFGALLERDDPMPAPVAAMEALAELVSRSDSSTIQE
LLALLRQASAQIAASSFNPVSAQSGTSLFLRFLTLQRPPPEMSFREFKAELVSRAREFVR
DSGKCRATIAAHMSNFIQDGNTLLRVVIQALLYAAQTQKKRFQVYVTESRPFGLGLKTHA
VLTEAGIPCIVVLDSAVAYIMSKCDLAVVGAEAVCESGGLVNFIGGYQMAIAAKAMGKPF
YALAESFKFTRLFPLSQYDIPSSLPSAPLAFPEFDDPVSTKSTSVPPTPVRPMIHSKMPE
ALEMSDEATRHNPILDYTTPDHITLIVSDIGVMTPSGVSDALLAVYAE