Protein Info for mRNA_7238 in Rhodosporidium toruloides IFO0880

Name: 15606
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 61 to 82 (22 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 192 to 210 (19 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details amino acids 301 to 319 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>mRNA_7238 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MAPVLQPHEAARSLVSSLATEIPTHLNFSSHVASLHPRYIDISSTKPAVLKAILDSTRTY
QILAIWSPDLTAVVLCYLFAAMLKGSTELLVRGEAVERAWASVRGKKGTEGIEVADAQAR
LSVPAKAAVSHFFNLVLATTVLALQLYAWRLFVVPQTPIRIDDVEVLMVALKLLLVGYAA
DLIFSAFSIEIFLHHLFTFALLVVGQIAAYKTSELKFCRLAQWLILQATLEQAEYLALGC
YHLSKYFSMQERPETARKMLRVAYRAMRVSSYVCWVQKFLPVGFAIYWLKRLWAEVDYLP
WGRAWCGMATAVLSLLLILQVRFCDDQSSLAAHFRHKLEGGPPPPRNGPVMRFLLRLFRS
RPRRASSSPLPQHAEECTQLDKAQKPVCETGRD