Protein Info for mRNA_7239 in Rhodosporidium toruloides IFO0880

Name: 15607
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 60 to 80 (21 residues), see Phobius details amino acids 128 to 149 (22 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 264 to 286 (23 residues), see Phobius details amino acids 298 to 316 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>mRNA_7239 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MPAMTAAVEELTTAFAPANTLPAMHLLLARRPDIDLPNITSASPAVIKGIIADTSTYEIL
TMWAPDIWAIVLCYTFAALLKGSLELMLRGEAVERAWAAVRGKEGKNGIEVADAKARLAV
PAKAALSHFFNLFLSTFTLILQVCAWRLFIVPETPVRLFDIKLLMAALKLLLVGYAADLL
FSDLCIEVFLHHLFTFALLVVGQIAAFKTSEIKFSRLAQWLILQATLEQTEYIALGCYHL
SKFFALQDRPDASKRFLKTAYRSMVVSSYVCWVQKFMPVAFAIYWLEKLWEEVDNLPWGK
AWCGLATTVISLLLILQVRFCDDQASLAAHFRHKLYGGTPPSRTGPVMRFLLKPLRSSRK
KPSSTTTERVEEGASEAQAVKNPFADPSMDELQPAITHASSSASSIQPLRHSLVPAPTDA
ATTSHEKA