Protein Info for mRNA_7255 in Rhodosporidium toruloides IFO0880

Name: 15623
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1123 transmembrane" amino acids 957 to 981 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1123 amino acids)

>mRNA_7255 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSRPFSPDSLSGSNGESASTPSAASRRICRQLVVEAEAHDEGVRATLYCKVSLPSTASSS
SQPHNLLTLLPSSRLSYSSTYALPLHDDSPEAIMAAWKFGILPSWVDDSYLDQNGFDSPG
ARSIRRRRSSAASDLLSTVTGAESDERREIEIVQEGERVALRLLPENGAVDSPPSGSPAT
ERPASRAGAATPTQAGQRNLEFVVVLTIDIDFGRLRLPRFANTITVPTPLCLRNTLVFDL
PSPPPSSAFSTWDLSVRPSLSNAQSTSHPAVNIAGTRISGTFPTTSSVSLRWAPQLADGT
APLLIKREALETSWKVDKAGAATAEVEVSGHFEYSGLREKQWVEVEVGVPFVQAQGSPLE
ITGCIASDGVTSVLDWEVAPAPTSAKPSNQPTNQLDLPVKTPPELPSLPPLIRQQTESGL
SDSAASVLSTSASTAYPFTPTPAPRRKRVSSRTSDPRPPSWTSLFDTAPPAPPVLDTSFS
TESPSRALPGPRVVKEPSLLQQAAPFDPEASAMDMSFEVSSVPSTSSELLDEPAQRPAPS
TSAMRPDEHSSTCLVRVQLDLGPSLRAFASLPTTADDDDLSPAFSFNLALHFPSSTLSAK
SAPDSSLRLALPSVTLPTALHEENVVSVSSTSPNRLIELVSPPPVSPDENAEPPMSPLPA
SKGVARWSTLRSGAARNGSAPPPVQVEIMAADASFAENDNVAPAPSPLASDWTGAEADFA
EGLAASAREEETADLLDERPPSPSTAAPSVIDVEALATSLPTDEPPSTVLDDTPLAHVNV
TMTPVPPAPGHSLWEYYYEFEFTPAYTGIVTSERSSADLTALAAWNERGEACLKNEQLEA
QDAKGQRFRVEGAQRLVLAVHRPEEGSLPKLGSIVQFERQIVKLSVELVPLQGLISEPRR
AEAMYASRTNTSLVRFCVPSGAPLGPFFTFKRTRLTRTRHLAVAPGASTIPSPRTRLWQL
LTILFALGIYYAIYATTSTPTLLQEHSRRQLRTTSVGAIPTSSSSFAMTPFLRTPHTVTT
TATSTSTIISFITHTPASTPPVVHTTTLYRTTTIRQVTPVTPTAPLAFDDSLPPATSTTI
IPRREHSLAQEDSHSLLESFQVWLERVKLEVRIRWRDLLAFIT