Protein Info for mRNA_7273 in Rhodosporidium toruloides IFO0880

Name: 15641
Annotation: K15859 SKN7 osomolarity two-component system, response regulator SKN7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 711 PF00447: HSF_DNA-bind" amino acids 125 to 224 (100 residues), 108.6 bits, see alignment E=2e-35 PF00072: Response_reg" amino acids 511 to 620 (110 residues), 88.7 bits, see alignment E=3e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (711 amino acids)

>mRNA_7273 K15859 SKN7 osomolarity two-component system, response regulator SKN7 (Rhodosporidium toruloides IFO0880)
MQGYPRHPQDSYAHHHHPQHPNPHAPQHYQQPPPPHPGYGHGMPPQQPQQQQMSDEGPGT
RKRKAQQAQQQAQQQQQQQLQMQQDDDEDEKPGSDAASASGGPGGATSAAGGAGSSKAKG
GASEFVKKLYKMLDDGEYSDVVSWGHDGSTFVVKDMNQFTTAILPAHFKHSNFASFVRQL
NKYDFHKVKNNDDGPSPYGENTWEFRHPNFRADMKDNLENIKRKAPAAKKAAQAAQQQRM
RAAASNGPLDPSLAAGPSGSLAGSLPPGDYNALQVQLDGLARTQQAMQQHMTNLSQDYQA
VIGEMMNFQRNMVAQDQLMQNLIQYLVSLEADQKGTASQDPSAPYVPSSQAQKLISSYTE
VARASYDQMADLSRRASLSGGQFPNLPPLPPPPPNFGHFEFAPLGRRDDGAQRQNGGYEQ
QGGQGPRGPGGASASPGQQQPGQQGQPQQQPGQQPPSQQQPPPPQFVHPAFSSGDPQAST
SAPAPTSTADRPPAAPRRQSNVPGWAVPPRVLLVEDDAVCRKLSSKFLEVFGCQIDVAVD
GVSAVNKMNMQKYDLVLMDIVMPNLDGVSATSLIRQFDPMTPIISMTSNSGPNDIMTYFS
HGMNDVLPKPFTKENLLSMLEKHLTHLKLMQQMAEIPRALGFTDNQIQDALAQSVVVTDE
GGQQVLNPFSSMGISDQDYVEMLQGIAMEKEGKRGLEVVRDEGTARFQEVQ