Protein Info for mRNA_7278 in Rhodosporidium toruloides IFO0880

Name: 15646
Annotation: HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 841 signal peptide" amino acids 1 to 66 (66 residues), see Phobius details transmembrane" amino acids 348 to 366 (19 residues), see Phobius details amino acids 581 to 597 (17 residues), see Phobius details amino acids 644 to 665 (22 residues), see Phobius details PF04082: Fungal_trans" amino acids 332 to 494 (163 residues), 71.9 bits, see alignment E=2.3e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (841 amino acids)

>mRNA_7278 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MVRSPLETATGALLVMPVLPARRGVHFTSSSPYSTLRRPLRRRSRSFGLFATALTLLSAM
DSAGPAPPAPASSFNEPTPPPAKRPRNGSTDGDSGKGRGKGSKATSCRECIRLKLKCSRE
WPCTSCVRRKVASICPDGELPHRDAFLQQETIKELLEQNKALSAALQQQQQQSPLPQYAH
ASLPLPPLPQQAPAPVSSSLQSLLLSPLAAATAPSPPFDRDSPDAPGNPLEAAAGRGPGV
METEGTAARFHGRGAGALFLIDAGATDSPDLYPGELLFPFASAPATSAMLPPDQYPPFDA
ALGYIDVYFTEVDWMYQPCARTFVDSDLRQLYSGPSNTANPCCLHPHRLATLLTIFALAL
TFSQNLEIASRRRNPQATAFFNAAAALLTSPPYNFMSRPTVAAVKCLHLMVSYLFCSGDR
EGARSAWTILGLASRAAQALGLHKNCAAWGLSADVTEERARAWWEIFVYDLLQSLNFGRP
YAIPLHFISCPRPTPPATGVTDSAFHAVKYEISLMFAKIADLLAAPDLPDYAAVLQLDRE
FKATAAKAPHWLRLGEAASTANTTHPPSDVERKLIPQRHMLVLLLHKGLLALHRPWFAKA
LMSGTEPMTSPYAASFNACLISARRHTSLMRSVLEKAPRAAVTWWFYAFHTFTSAVIQSS
VLLRAPYCMLNEDIRADFAQALQVFNDIEPYSALAGRALPILRKLKEALERGPNGVGESQ
AREAHVQVQQQAQVQQPVQMAQQAISTDNLPALPAPPTYPPLPVDPSLNPSAGAFAPPPQ
QHYDVHNDPAGVLLSNLNTPMAWDSRALDFSSYDSIGETLLFWNPASALGPETNAWNLGG
F