Protein Info for mRNA_7306 in Rhodosporidium toruloides IFO0880

Name: 15674
Annotation: KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 686 transmembrane" amino acids 549 to 560 (12 residues), see Phobius details amino acids 580 to 599 (20 residues), see Phobius details PF00172: Zn_clus" amino acids 356 to 386 (31 residues), 29.7 bits, see alignment (E = 2.8e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (686 amino acids)

>mRNA_7306 KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains (Rhodosporidium toruloides IFO0880)
MYPTWKNSPRAASSYLPTSSTPATSDPSTAHSHGVVWVADYPGVVGGHAGQAYGVERAGD
ARAMGSASFASQDGTLSHSGLLAGYGHGQGRDQTDRMWQAERQQQAGANHSISYPSTSAS
FIPYDMRDNPSNQYTPPVSAPSYSGGYAMPTAPHPSWRQQPQPEVAAGAYASTPAASGQY
ADNCGNHAQQSSKRPRTGEGPPRDIRWHLQNAAIPSLQITTSLPTSTAGVPHPSPVRQRL
SSHSLGDSGGLKPTPAASSSEISPVSSMSSGPSIAAASGLPAYEPHPSLTTSDKTSPATF
VLPIPRSDETPATSLPPSTSSSASVPSAPSASLALSPQIHPAQVPSPQPAQAKADKSCAP
CRTRKVRCTRTWPKCARCIERRLDCGYGGLVPIDVVKQMHPESRVLELEARIKSLESELV
NAQHASVSPSNGFNGLSLASDLPFEIYTRLFGYPQLAHNLAGPSALFSFDEETDVVETAL
GRAHVDAVCSAVQRRAAETKGLPKLEEGEADSEIGWWRSVVARDAEMVDGVAALGALERS
RHVDWVRWVVWALLDAFWATCSSNVPTFRPFHPPTRKLHFYLSLSSLTACERAVLTAFLS
IGIRSTDDVALLGIASEFSPAEEGRKREELARVMRSLMYELYERAEVGFGEGSEAGLQTG
LVVGVSASTRTSSTRRRQPKLANRSR