Protein Info for mRNA_7309 in Rhodosporidium toruloides IFO0880

Name: 15677
Annotation: KOG0803 Predicted E3 ubiquitin ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1755 transmembrane" amino acids 1466 to 1484 (19 residues), see Phobius details amino acids 1496 to 1512 (17 residues), see Phobius details PF13639: zf-RING_2" amino acids 1704 to 1752 (49 residues), 29 bits, see alignment (E = 5.6e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1755 amino acids)

>mRNA_7309 KOG0803 Predicted E3 ubiquitin ligase (Rhodosporidium toruloides IFO0880)
MAKKQSSASSATRKKHAAKQAKRRGGGDDIDDDGESARPLQRGQNKSKKDRKQDKKHRVK
QYIPPPPPPKGLPDPVDLYLVQAGKQPDAELVVVLRRLHKKDEATISRGVDGLEGWVRET
LRMDADGDGEDWEREMRQEGVVDCMAVWAHHFPRLALHPSRRLRLQVHSLHSLLVANPAS
LPRGQPVPPLLASTRSALLSPLWLESRDYVGAWCTAAWDNDRAIRREARGSWDAVLLPLS
TAAAEEKEGINLVEQADAIASFCFSVIFGGASQTAPSSGTDTPTSSSDSTEDPGFLRTSS
ILALSYLLSTLPSPLALSEDTLSTLTGEQMWDLVVRNEPSSGVKEQPQMVRRAMYELLGA
IVGRKEEELLVEAEKSVKGEEEDAEDEEEEEDREARLQGVAVRVLANCWAEEDGWPGIIA
FLRRYPQAWTLADAALADSAERDDEQEETPPADFTPTPTISLFFQHLASGCSSHPTSLYP
TILLLLSTIPSSLLPSSRPALSALFTAFWSAHSSRAIAINGRLAIDAWISAFLECLVYSL
SKVDDSATVVELAKECVGEKVWRAYLGRLEEGEGRPIASKKVASEIQVALSRLAAKEDKA
AFDAVWAVVEKEALDVLAGEADGWPISLPALAMALQALGDSKSEAVREKGGALAKNCVAA
AVRRVPQEEKLEAKEELLRFVLDAKELVKCDEEMMQALDELARSHLPPLFPTSPLALSVF
ASHLASSSVSSRADTWTSLFQTPPATSTILQLVDAVTDTGLAGDLPSAGLDEHVKAIAEK
VLAPDARYDTDELELLRRVMLQPEPLVSPGLRASLLRLAVDALREPTAAALTTSSPLPRN
LDSLIAPTALIAHYIQLADNARAIASLDGAAELLADVAYLVPDCRLEREGLYVPGEAVAA
AQQAWSSVVRAVGDEVVARAVARLKERVGDVNSRPSAVEVVSAAADVLDTLPSTTTSLSD
VLPSKEAIERLYSDSSLSLPSPSLAILDSLVPPVDASSPSTTDAFDSSFLSAYSRTLVAF
LEVSARDHTILRRSTWILPHLLLVADVARDELAKPSRSSGLFGSNVPEEILQRVLAAAEG
ASSYLLSSAANRLSTGWHASAVGHLRSKERPAVPEGDDLLATLDQLWTPAKTNADEVKAV
YARRGVRTFLEATLRYSEDGGPQDAERWLAMAQNLMSAPDLACAILHAIKPVLLDTPRFE
RYQNELAANLAGVQPSAIDVKAVPALRQLLAASPPLDAPLIFLPQQRSMFLIQAISRWIG
SDEPISEELHAGIAELFCHLAPIVQDLSGGHWDLMFDLLETNLDSADWEEPVTLPPAYHS
CRLLSQIKDLAAANADLGDTAKARLTSSLEMVLRLFVNRSPARTRDEPRAAMVDTMARLV
KDLPPKLLSMDKSFEQLLRLLQDPAWAVQLSSYDLLRRVVKSYVEDLVVEAELDTEEKLE
IRLPESLVALLRVPVADDSASSATTYLLGWMTAFSFFGSASPRLRTAYIEQLRDDGLIVQ
SLLPSLFALLSISDRTRPFDLAPWSIDDFHLDLFDASSPSSLPVLAAHVYYRALQAVPSI
IRSYWSSLQNLQLSRTIQSFTSRHFSPLLISDELLALRDPSSPVGQQLRDNDDFSVKVAA
NASEVKVVFVVDEESMEVAVKVPSEFPLAGVEIKDVRKVGVTEKQWRAWLLAMQQVITSQ
SAAIADAILLFKRNVQLHFEGVESCAICYSTVSTIDRTLPSKKCRTCSQVFHAGCLFKWF
TTSGGSTCPLCRSLF