Protein Info for mRNA_7312 in Rhodosporidium toruloides IFO0880

Name: 15680
Annotation: HMMPfam-Protein of unknown function (DUF3429)-PF11911

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 174 to 192 (19 residues), see Phobius details amino acids 205 to 228 (24 residues), see Phobius details amino acids 257 to 279 (23 residues), see Phobius details PF11911: DUF3429" amino acids 116 to 273 (158 residues), 135.5 bits, see alignment E=8.8e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>mRNA_7312 HMMPfam-Protein of unknown function (DUF3429)-PF11911 (Rhodosporidium toruloides IFO0880)
MFSTRLLARSSLCHAAFPRASAATPRLFATTALARFSHPTHPALEASPVSQQPGSKNLKD
MGKNAAEEAKGVARTVAEAIAGEANDVTSQNAPKEKFGAGDISADIASMKEIVEDVPKPA
IRWGVAGLIPYAGTSLAIVHFARQAKLAVENGAEAGYDPQAAFSLLEHAQLLQVQYGAII
ISFLGAVHWGLEWAKFGGVQGNARYLLGVAPVVAGWGSLLIPGNMALVTQWAAFFGQWYA
DSKTTEKGWSPKWYATYRFWLTSIVGGSILVSLAARGYYAADLDLANSESQVKKLMAARP
PGAVGANPKGTSVELGGMRAEKAEDAYVKFTNVEKEREKQKEEEEKAKKEEEEKKKEEQK
KESKKNNIADQVKKAEDN