Protein Info for mRNA_7313 in Rhodosporidium toruloides IFO0880
Name: 15681
Annotation: K00417 QCR7, UQCRB ubiquinol-cytochrome c reductase subunit 7
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 47% identical to QCR7_SCHPO: Cytochrome b-c1 complex subunit 7 (qcr7) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)
KEGG orthology group: K00417, ubiquinol-cytochrome c reductase subunit 7 [EC: 1.10.2.2] (inferred from 55% identity to uma:UM04237.1)Predicted SEED Role
No annotation
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.10.2.2
Use Curated BLAST to search for 1.10.2.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (123 amino acids)
>mRNA_7313 K00417 QCR7, UQCRB ubiquinol-cytochrome c reductase subunit 7 (Rhodosporidium toruloides IFO0880) MSALGLSFAKQIKASRTFGPFITKLAHRYANLTGHRAHGLRYDDILIEESAAVQKALGRL SEREAYDRAYRLRVASMCAIAHQELPKAEQVKPEEDVRYLKPLVEEVEAEEAERCAFDHA TRA